View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_high_26 (Length: 401)

Name: NF11426_high_26
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_high_26
NF11426_high_26
[»] chr4 (9 HSPs)
chr4 (12-385)||(51148868-51149241)
chr4 (154-385)||(51159873-51160104)
chr4 (191-385)||(51202609-51202803)
chr4 (131-385)||(29933925-29934179)
chr4 (12-122)||(51159759-51159869)
chr4 (12-94)||(29934185-29934267)
chr4 (190-364)||(51216269-51216443)
chr4 (13-84)||(51202368-51202439)
chr4 (15-85)||(51215424-51215494)
[»] chr3 (4 HSPs)
chr3 (190-364)||(49734059-49734233)
chr3 (188-337)||(36288937-36289086)
chr3 (15-86)||(49734523-49734594)
chr3 (45-86)||(36288799-36288840)
[»] chr8 (1 HSPs)
chr8 (216-343)||(27727391-27727518)
[»] chr2 (1 HSPs)
chr2 (261-337)||(5827236-5827312)
[»] chr6 (2 HSPs)
chr6 (235-337)||(29327103-29327205)
chr6 (298-334)||(2675124-2675160)
[»] chr1 (1 HSPs)
chr1 (237-355)||(38525263-38525381)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 51148868 - 51149241
Alignment:
Q  12 acagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaattcctttcaatccaacctctcttaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51148868 acagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaattcctttcaatccaacctctcttaaa 51148967  T
Q  112 tgctatgcaactaagatacatctttaaaattgaaacatacgcacatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51148968 tgctatgcaactaagatacatctttaaaattgaaacatacgcacatacattagtctgaactcttgaacatgatactatatatgtagggctatgacacgat 51149067  T
Q  212 agtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51149068 agtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaa 51149167  T
Q  312 gcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaac 385  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  51149168 gcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaac 51149241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 154 - 385
Target Start/End: Original strand, 51159873 - 51160104
Alignment:
Q  154 acatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagca 253  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51159873 acatacataggtctgaaatcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatccgggggacagaagca 51159972  T
Q  254 gcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaa 353  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  51159973 gcgtgtggcaattgcacgagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaa 51160072  T
Q  354 gatgcacttgaccgtgtaatggtggagcgaac 385  Q
    ||||||||||||||||||||||||||||||||    
T  51160073 gatgcacttgaccgtgtaatggtggagcgaac 51160104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 191 - 385
Target Start/End: Original strand, 51202609 - 51202803
Alignment:
Q  191 tatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca 290  Q
    ||||||||| ||||| ||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51202609 tatgcagggttatgatacagtagtaggagagagaggagttcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca 51202708  T
Q  291 aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaac 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51202709 aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaac 51202803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 131 - 385
Target Start/End: Complemental strand, 29934179 - 29933925
Alignment:
Q  131 atctttaaaattgaaacatacgcacatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaatt 230  Q
    |||||||||||||||||||||  ||||||||  |||  || |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29934179 atctttaaaattgaaacatacatacatacataggtccaaaatcttgagcatggtactatatatgcagggctatgacacgatagtaggcgagagaggaatt 29934080  T
Q  231 caattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatg 330  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29934079 caattatccgggggacagaagcagcgggtggcaattgcaagagcgttggtgaagaatccgaaaatactattactagatgaagcaactagtgcacttgatg 29933980  T
Q  331 ctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaac 385  Q
    |||||||||| || ||||| ||||||||||||||| |||| |||||||| |||||    
T  29933979 ctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaac 29933925  T

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Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 51159759 - 51159869
Alignment:
Q  12 acagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaattcctttcaatccaacctctcttaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51159759 acagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaattcctttcaatccaacctctcttaaa 51159858  T
Q  112 tgctatgcaac 122  Q
    |||| ||||||    
T  51159859 tgctttgcaac 51159869  T

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Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 29934267 - 29934185
Alignment:
Q  12 acagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaattcctttca 94  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29934267 acagaagcagaaattgtagccgcggcagaactagcaaatgctcaccagttcattagtagtttgcagaaggtaaattcctttca 29934185  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 364
Target Start/End: Original strand, 51216269 - 51216443
Alignment:
Q  190 atatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc 289  Q
    |||||||||| ||||| || |||||||| ||| |||| |||||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| || |  ||    
T  51216269 atatgcaggggtatgatacaatagtaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggcc 51216368  T
Q  290 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttga 364  Q
    || |||| || |||||||||| || || ||||| |||||||| |||||||| || ||||| ||||||||||||||    
T  51216369 aagaatattactactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttga 51216443  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 51202368 - 51202439
Alignment:
Q  13 cagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaa 84  Q
    |||||||||| ||| ||||||| |||||| |||||||||||||| |||| ||| |||||||||| |||||||    
T  51202368 cagaggcagagattatagctgcagcagaattagcaaatgctcacaagtttattagtagtttgcaaaaggtaa 51202439  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 51215424 - 51215494
Alignment:
Q  15 gaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaa 85  Q
    ||||| ||| || ||||||| ||||||||||||||||||||  | |||||| ||||||||||| |||||||    
T  51215424 gaggctgaagttatagctgcagcagaactagcaaatgctcataacttcattagtagtttgcagcaggtaaa 51215494  T

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Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 190 - 364
Target Start/End: Complemental strand, 49734233 - 49734059
Alignment:
Q  190 atatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc 289  Q
    |||||||||| |||||||| |||||||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  49734233 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 49734134  T
Q  290 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttga 364  Q
    || |||| || ||||||||||||| || ||||||||||||||||||||||| || ||||| || |||||||||||    
T  49734133 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttga 49734059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 337
Target Start/End: Original strand, 36288937 - 36289086
Alignment:
Q  188 atatatgcagggctatgacacgatagtaggtgagagaggaattca-attatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaa 286  Q
    |||||||||||||||||||||  | || || ||| ||||| | || |||||| || |||||||||||||||||||||||||| ||||| ||| |||||||    
T  36288937 atatatgcagggctatgacaccgttgtgggggagcgagga-tccagattatcgggtggacagaagcagcgtgtggcaattgcaagagcaatattgaagaa 36289035  T
Q  287 tccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtc 337  Q
    |||||||||| || ||||||||||||| || ||||| ||||||||||||||    
T  36289036 tccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtc 36289086  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 49734594 - 49734523
Alignment:
Q  15 gaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaat 86  Q
    ||||| |||||| ||||||| ||| |||| |||||||||||  |||||||| | ||||||||| ||||||||    
T  49734594 gaggctgaaattatagctgcagcaaaacttgcaaatgctcataagttcattagcagtttgcagcaggtaaat 49734523  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 36288799 - 36288840
Alignment:
Q  45 gcaaatgctcaccagttcattggtagtttgcagaaggtaaat 86  Q
    |||||||||||| |||||||| ||||||||||| ||||||||    
T  36288799 gcaaatgctcacaagttcattagtagtttgcagcaggtaaat 36288840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 27727391 - 27727518
Alignment:
Q  216 ggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaa 315  Q
    |||||||||||||| ||||||||||||||||| ||||||||  | |||||  |  | |||||||| || ||||||  ||| || ||| ||||||||||||    
T  27727391 ggtgagagaggaatacaattatctgggggacaaaagcagcgaattgcaatatctcgtgctatagttaaaaatccatcaatccttttattagatgaagcaa 27727490  T
Q  316 ctagtgcacttgatgctgagtctgagaa 343  Q
    |||||||  | ||||| |||||||||||    
T  27727491 ctagtgctttggatgccgagtctgagaa 27727518  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 5827236 - 5827312
Alignment:
Q  261 gcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtc 337  Q
    |||||||| ||||||||| |||| || || | |||||| ||||| ||||| ||||| |||||||| |||||||||||    
T  5827236 gcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaaccagtgcactcgatgctgagtc 5827312  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 29327205 - 29327103
Alignment:
Q  235 tatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctga 334  Q
    ||||||| ||||||||||||||  | || ||||| ||||| ||  |||| || || |||||||| || || ||||| ||||| |||||||||||||| ||    
T  29327205 tatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttgatgaggcaacaagtgcacttgatgccga 29327106  T
Q  335 gtc 337  Q
    |||    
T  29327105 gtc 29327103  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 2675160 - 2675124
Alignment:
Q  298 tattactagatgaagcaactagtgcacttgatgctga 334  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  2675160 tattactagatgaagcaacaagtgcacttgattctga 2675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 38525381 - 38525263
Alignment:
Q  237 tctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagt 336  Q
    ||||| ||||||||||||||  | || ||||| ||||| ||  | |||||||||| ||| ||| | || |||||||| || |||||||||||||| || |    
T  38525381 tctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatgcagaat 38525282  T
Q  337 ctgagaaggtggtacaaga 355  Q
    |||| | |||||| |||||    
T  38525281 ctgaaagggtggtgcaaga 38525263  T

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