View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_29 (Length: 349)
Name: NF11426_high_29
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47179360 - 47179037
Alignment:
| Q |
1 |
tctttgatgatgatgtgttagtgttaaaataaaaacgttaattataaaacctannnnnnn-cgttgagttttggtggaaaaatattt-gaaattgagtnn |
98 |
Q |
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| T |
47179360 |
tctttgatgatgatgtgttagcgttaaaataaaaacgttaattataaaacctattttttttcgttgagttttagtggaaaaatattttgaaattgagtaa |
47179261 |
T |
|
| Q |
99 |
nnnnn-taaaacaactaaacctcatttaacttgaattgatttttgttagaaccaagttggaatttaaagaacaatgatctccaattttggttctgttgat |
197 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47179260 |
aaaaaataaaacaactgaacctcatttaacttgaattgatttttgttagaaccaagttggaatttaaagaacaatgatctccaattttggttctgttgaa |
47179161 |
T |
|
| Q |
198 |
accaaagtatataagagaacaattttttctctaacttgtgtttgaatgtgtagaaagtatttttagtattgaaaccatgaaaatcggatacggctgtcat |
297 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47179160 |
accaaagtatataagagaacaattttttctcta------------------agaaagtatttttagtattgaaaccatgaaaatcggatacggctgtcat |
47179079 |
T |
|
| Q |
298 |
aaaaacctgaagtcactgcagtcacctaatatctaccctatg |
339 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47179078 |
aaaaatctgaagtcactgcagtcacctaatatctaccctatg |
47179037 |
T |
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