View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_high_37 (Length: 284)
Name: NF11426_high_37
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_37 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4558501 - 4558235
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558501 |
ttgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctaca |
4558402 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4558401 |
acctttccgcgaacttcttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcatagtttctgatattggcatgtcttttacc |
4558302 |
T |
|
| Q |
201 |
atacaagctgctgaagaactttcaatcgctgtcgttttctttagtccatccaatgcatgtacatttt |
267 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4558301 |
atacaagcttctgaagaactttcaatcccttctgttttctttagtccatccaatgcatgtacatttt |
4558235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4572342 - 4572077
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
4572342 |
ttgagagtattccagatggtttatctccaacggatggcgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctaca |
4572243 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
4572242 |
acctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttctgatattagcatgtcctttact |
4572143 |
T |
|
| Q |
201 |
atacaagctgctgaagaactttcaatcgctgtcgttttctttagtccatccaatgcatgtacattt |
266 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
4572142 |
atacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacattt |
4572077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4587008 - 4586748
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4587008 |
ttgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctaca |
4586909 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
4586908 |
acctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttatccctccagtcacttgtatagtttctgatattaccatgtcctttact |
4586809 |
T |
|
| Q |
201 |
atacaagctgctgaagaactttcaatcgctgtcgttttctttagtccatccaatgcatgta |
261 |
Q |
| |
|
|||||||||||||||||||||||| || | | |||||||||| |||| ||| |||||||| |
|
|
| T |
4586808 |
atacaagctgctgaagaactttcactcccacttgttttctttaatccagccagtgcatgta |
4586748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 4612508 - 4612743
Alignment:
| Q |
33 |
gatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctagactaaatg |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||| |
|
|
| T |
4612508 |
gatggtgatggtgatgttagtcaagacatatatgctctttgtgaatcaatcagaaagaacttcctacaaccttttcgcgaacttatttctagacttaatg |
4612607 |
T |
|
| Q |
133 |
actctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttaccatacaagctgctgaagaactttcaatcgctgt |
232 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| |||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
4612608 |
actctgccacttctggtcttgtccctccggttacgtgcataattgctgataatagcatgtcttttaccatacaagctggtgaagaactttcaatccctgt |
4612707 |
T |
|
| Q |
233 |
cgttttctttagtccatccaatgcatgtacattttg |
268 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4612708 |
tgttttctttagtccagccaatgcatgtacattttg |
4612743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4581390 - 4581130
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| | || || ||| | ||||||| |||||||||| | ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
4581390 |
ttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaagaacttcctaca |
4581291 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
4581290 |
acctttttgtgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgataatagcatgtattttaca |
4581191 |
T |
|
| Q |
201 |
atacaagctgctgaagaactttcaatcgctgtcgttttctttagtccatccaatgcatgta |
261 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||| |
|
|
| T |
4581190 |
atacaagctgctgaagaactttcaatccctgttgttttctttagtccagccagtgcatgta |
4581130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 4599537 - 4599276
Alignment:
| Q |
3 |
gagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctacaac |
102 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||| || |||||| | |||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
4599537 |
gagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaataacttcctccaac |
4599438 |
T |
|
| Q |
103 |
ctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttaccat |
202 |
Q |
| |
|
| || |||||||||||||||||||| |||| ||| || |||||||| ||||||||||||||||| ||||| |||| | |||||| ||||| || |
|
|
| T |
4599437 |
catttcgcgaacttcttgctagactctatgagtcttctactgctggtcttatccctccagttacttgcttagtta-tgattggaacatgtcctttactat |
4599339 |
T |
|
| Q |
203 |
acaagctgctgaagaactttcaatcgctgtcgttttctttagtccatccaatgcatgtacatt |
265 |
Q |
| |
|
||||| |||||||||||||||| | || | ||| |||||||||||||||||||||||||||| |
|
|
| T |
4599338 |
acaagttgctgaagaactttcacttcctattgttctctttagtccatccaatgcatgtacatt |
4599276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4298250 - 4298468
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||||| || |
|
|
| T |
4298250 |
ttgagactattccagatggtctgactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttca |
4298349 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|| || | ||||||||||||| ||| ||| |||| || |||||||||| || |||||||||||| ||||| ||||| || ||||| |||||| |
|
|
| T |
4298350 |
gccctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttacc |
4298449 |
T |
|
| Q |
201 |
atacaagctgctgaagaac |
219 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
4298450 |
atacaagctgcggaagaac |
4298468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4488949 - 4489130
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| || || || | || |
|
|
| T |
4488949 |
ttgagactattccagatggtttaactccaacagatggtgatggcgatgttagtcaagatttacgcgctctttgtctatcaatcatgaacaattttcacca |
4489048 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgat |
182 |
Q |
| |
|
| || | | | ||||||||| ||| |||||||||| || |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4489049 |
attctttggtgtatttcttgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttctgat |
4489130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4623683 - 4623467
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||| ||||||||||||||| | |||| ||| |||||||| ||||||||||||||||||| | |||||| | | ||||| || ||||| ||| || |
|
|
| T |
4623683 |
ttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaagaatttctatca |
4623584 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|| || | ||||||||||| | ||| ||||||||| || |||||||||| || |||||||||||| ||||||| ||| | |||||| ||||| |
|
|
| T |
4623583 |
tcccttttgtgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttaca |
4623484 |
T |
|
| Q |
201 |
atacaagctgctgaaga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4623483 |
atacaagctgctgaaga |
4623467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4627526 - 4627308
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||| || |||||||||||| | ||| || |||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||| || |
|
|
| T |
4627526 |
ttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttca |
4627427 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|| || | ||||||||||||| ||| ||||||| | || |||||||||| | |||||||||||| ||||||| ||| | ||||| |||||| |
|
|
| T |
4627426 |
gccctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttacc |
4627327 |
T |
|
| Q |
201 |
atacaagctgctgaagaac |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4627326 |
atacaagctgctgaagaac |
4627308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 4507287 - 4507106
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
|||||||| | |||||||||||| |||||| |||||||||||| ||||||| || |||| | | || || || |||| || |||||||| || | | |
|
|
| T |
4507287 |
ttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaatttattta |
4507188 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgat |
182 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||| | |||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
4507187 |
cccttttcgcgaacttctagctagacttgatgactctgcgaaatctggtcttgtgcctcctgttacttgcttagtttctgat |
4507106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4562038 - 4561945
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaactt |
94 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||||||||||| ||| ||||||||||| ||||| ||||| || ||||||||| || |||||| |
|
|
| T |
4562038 |
ttgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctcttggtgaatcaatcataacgaactt |
4561945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3173379 - 3173286
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaactt |
94 |
Q |
| |
|
|||||||||| |||||||||||| || ||| ||| |||||||| ||||||||||||||| ||| |||||||||| |||||||| |||||||| |
|
|
| T |
3173379 |
ttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaatcatcaagaactt |
3173286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4575831 - 4575738
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaactt |
94 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||| |||| ||||| ||||||||| ||||| ||||| || ||||||||| || |||||| |
|
|
| T |
4575831 |
ttgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaatcataacgaactt |
4575738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4258928 - 4259144
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
|||||||||||| ||||||| | ||||| ||| |||||||||||||||| ||||||| ||| | | |||| | |||| || |||||||||||||| || |
|
|
| T |
4258928 |
ttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaagaacttccttca |
4259027 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|| || | ||||||||||||| ||| | ||||| | || ||||| |||| || || ||||||||| ||||||||||| | |||||| |||| |
|
|
| T |
4259028 |
gccctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagt |
4259127 |
T |
|
| Q |
201 |
atacaagctgctgaaga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4259128 |
atacaagctgctgaaga |
4259144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4517716 - 4517498
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| | || || ||||| ||||||||||||||||| | |||||| | ||||| |||||||| ||| || |
|
|
| T |
4517716 |
ttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacattatctctctttccgattcaataagaaagaatttctatca |
4517617 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttacc |
200 |
Q |
| |
|
|| ||| | ||||||||||||||||| || || ||| | ||||| | | ||||| |||| |||| |||||||||||||| | || ||||||| |
|
|
| T |
4517616 |
ccccttctgtgaacttcttgctagacttaaagattcttccaatgatggtcatattcctcctgttagttgcttagtttctgatattggattgacttttact |
4517517 |
T |
|
| Q |
201 |
atacaagctgctgaagaac |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4517516 |
atacaagctgctgaagaac |
4517498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4503045 - 4503226
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
||||||| || |||||||||||| |||| ||| |||||||| ||||||||||||||| ||| |||||| | | |||||||| ||||| || | || |
|
|
| T |
4503045 |
ttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagacttacgcgctctctatctatcaatcaagaagaattttcacca |
4503144 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgat |
182 |
Q |
| |
|
| || | ||| |||||| || ||| |||||||||| || |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4503145 |
attctttggtgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgat |
4503226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 4618669 - 4618581
Alignment:
| Q |
9 |
attccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcct |
97 |
Q |
| |
|
||||||||||||||| | |||| ||| |||||||| |||||||||||||| ||| |||||||| ||||| | |||||||||||||| |
|
|
| T |
4618669 |
attccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagatgtaccaactctttgtcaatcagtaagaaagaacttcct |
4618581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 4594375 - 4594250
Alignment:
| Q |
12 |
ccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcg |
111 |
Q |
| |
|
||||||||| || | |||| ||| |||||||| ||||||||||||||||||| | ||||| | |||| || |||||||| ||||| |||| || | | |
|
|
| T |
4594375 |
ccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctcttgctcaatctataagaaagaatttccttaaacccttttgtg |
4594276 |
T |
|
| Q |
112 |
aacttcttgctagactaaatgactct |
137 |
Q |
| |
|
|||||||| | ||||| ||||||||| |
|
|
| T |
4594275 |
aacttcttacaagacttaatgactct |
4594250 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 4255551 - 4255607
Alignment:
| Q |
161 |
agttacttgcatagtttctgatattagcatgtcttttaccatacaagctgctgaaga |
217 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
4255551 |
agttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaaga |
4255607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 4471183 - 4471112
Alignment:
| Q |
111 |
gaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgat |
182 |
Q |
| |
|
||||||||| ||||||| ||| ||||| || |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4471183 |
gaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgat |
4471112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 4513809 - 4513954
Alignment:
| Q |
76 |
aatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagt |
175 |
Q |
| |
|
|||||||||||||||| | | | ||||||| ||||||||| | |||| ||| |||||||||| || | | |||||| | ||| ||||||||| |||| |
|
|
| T |
4513809 |
aatcaatcagaaagaattgcatcgaaccttttcgcgaacttttagctaaacttaatgactctgcaaaagccggtcttataccttttgttacttgcttagt |
4513908 |
T |
|
| Q |
176 |
ttctgatattagcatgtcttttaccatacaagctgctgaagaactt |
221 |
Q |
| |
|
||||||| || ||| | ||||| | ||||| ||||||||||||| |
|
|
| T |
4513909 |
ttctgattgtattatgccatttactacacaagttgctgaagaactt |
4513954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4569450 - 4569393
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaaga |
58 |
Q |
| |
|
||||||||||||||||||||||| |||| || || ||| |||| ||| |||||||||| |
|
|
| T |
4569450 |
ttgagactattccagatggtttaactccgacagaaggttatggtgatattagtcaaga |
4569393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 16685039 - 16685312
Alignment:
| Q |
1 |
ttgagactattccagatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctaca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16685039 |
ttgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctcca |
16685138 |
T |
|
| Q |
101 |
acctttccgcgaacttcttgctagactaaatg-------actctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtc |
193 |
Q |
| |
|
||| || ||||||| |||||||||||| ||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685139 |
accctttcgcgaacatcttgctagacttcatgaccgtgcacggtgcatcatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtc |
16685238 |
T |
|
| Q |
194 |
ttttaccatacaagctgctgaagaactttcaatcgctgtcgttttctttagtccatccaatgcatgtacatttt |
267 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||| ||| |||||| |||||| |||||||||||||||| |
|
|
| T |
16685239 |
ttttactatacaagctgctgaagaactttcactccctgttgttctctttaatccatcgaatgcatgtacatttt |
16685312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 20862600 - 20862776
Alignment:
| Q |
45 |
gatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctagactaaatgactctgaaacat |
144 |
Q |
| |
|
||||||||||||||| | || ||||| || ||| |||||||| ||||||| | | ||| || ||||||||||| | ||| |||||||| | || |
|
|
| T |
20862600 |
gatgttagtcaagacttccaatctcttcgtgaattaatcagaacgaacttcatcgacagttttcgtgaacttcttgccaaacttcatgactcttccaaat |
20862699 |
T |
|
| Q |
145 |
ctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttaccatacaagctgctgaagaactt |
221 |
Q |
| |
|
|||||||| | ||||| ||||||||| |||||||||||| | |||||| |||||||||||| ||||||||||||| |
|
|
| T |
20862700 |
ctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtcagttaccatacaagttgctgaagaactt |
20862776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 2205 - 2423
Alignment:
| Q |
3 |
gagactattccagatggtttacctccaacg---gatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctac |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||| | |||| |||||| |||||||||||||||||| | |||||||||||||||||||||| |||||||| | |
|
|
| T |
2205 |
gagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttc |
2304 |
T |
|
| Q |
100 |
aacctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttac |
199 |
Q |
| |
|
| || |||||||||||||||||||| | || |||| | ||||||||| |||||||||| ||| || ||||||||||| | |||||| ||||| |
|
|
| T |
2305 |
acttctttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttac |
2404 |
T |
|
| Q |
200 |
catacaagctgctgaagaa |
218 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2405 |
catacaagctgctgaagaa |
2423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 2198 - 2016
Alignment:
| Q |
3 |
gagactattccagatggtttacctccaacg---gatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctac |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||| | |||| |||||| |||||||||||||||||| | |||||||||||||||||||||| |||||||| | |
|
|
| T |
2198 |
gagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttc |
2099 |
T |
|
| Q |
100 |
aacctttccgcgaacttcttgctagactaaatgactctgaaacatctggtcttgtccctccagttacttgcatagtttctgat |
182 |
Q |
| |
|
| || |||||||||||||||||||| | || |||| | ||||||||| |||||||||| ||| || ||||||||||| |
|
|
| T |
2098 |
acttctttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgat |
2016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 3310 - 3492
Alignment:
| Q |
37 |
gtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctagactaaatgactc |
136 |
Q |
| |
|
||||||| ||||||| ||||||||||| | ||||| | |||| || |||| ||| ||| | || || ||| |||||||||| || ||| ||||||| |
|
|
| T |
3310 |
gtgatggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactc |
3409 |
T |
|
| Q |
137 |
tgaaacatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtcttttaccatacaagctgctgaagaac |
219 |
Q |
| |
|
|| || |||||||||| || | ||||||||||||||| ||||| | |||| | ||||||||||||||||||||||||| |
|
|
| T |
3410 |
tgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaac |
3492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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