View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_38 (Length: 278)
Name: NF11426_high_38
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 10495910 - 10495649
Alignment:
| Q |
1 |
aatctagcttatatattagtctaacatcgttacaaatataacaaattttaaccgactcaatgttgatgtaaccttactttacacagattattaaagagtc |
100 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10495910 |
aatctagcttatatactagtctaacaccgttacaaatataacaaattttaaccgactcaatgttgatgtaaccttactttacacagattattaaagagtc |
10495811 |
T |
|
| Q |
101 |
tgagaaggatcatgatcctaaagcaagctttaaaggaaacagaaaactagaatagagttagcatggtttacaatacggaaaacagaaaataaaaactgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10495810 |
tgagaaggatcatgatcctaaagcaagctttaaaggaaacagaaaactataatagagttagcatggtttacaatacggaaaacagaaaataaaaactgag |
10495711 |
T |
|
| Q |
201 |
taacatgttaaacacaaatattatcataaacttcaatgctattagataatgataataaaaac |
262 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10495710 |
taatatgttaaacacaaatattatcataaacttcaatactattagataatgataataaaaac |
10495649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 260
Target Start/End: Complemental strand, 13334793 - 13334646
Alignment:
| Q |
114 |
gatcctaaagcaagctttaaaggaaacagaaaactagaatagagttagcatggtttacaatacggaaaacaga--aaataaaaactgagtaacatgttaa |
211 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||| ||||||| |
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| T |
13334793 |
gatcctaaaacaagctttgaaggaaacagaaaactagaatagagttagcatggtttacaatacagaaaacagaacaaaaaaaaattgagtaa-atgttaa |
13334695 |
T |
|
| Q |
212 |
acacaaatattatcataaacttcaatgctattagataatgataataaaa |
260 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13334694 |
acagaaacattatcataaacttcaatgctattagataatgataataaaa |
13334646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 8672467 - 8672350
Alignment:
| Q |
143 |
aaaactagaatagagttagcatggtttacaatacggaaaacagaaaataaaaactgagtaacatgttaaacacaaatattatcataaacttcaatgctat |
242 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||| ||||||||| |||| |||||||||||||||||| |
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|
| T |
8672467 |
aaaactagaatagagttagcatgatttacaatacagaaaacagaaagaaaaaaaaaagtaacatgtgaaacacaaacattaacataaacttcaatgctat |
8672368 |
T |
|
| Q |
243 |
tagataatgataataaaa |
260 |
Q |
| |
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|||||||||||||||||| |
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| T |
8672367 |
tagataatgataataaaa |
8672350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 8666246 - 8666306
Alignment:
| Q |
200 |
gtaacatgttaaacacaaatattatcataaacttcaatgctattagataatgataataaaa |
260 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
8666246 |
gtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaa |
8666306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 8666175 - 8666220
Alignment:
| Q |
143 |
aaaactagaatagagttagcatggtttacaatacggaaaacagaaa |
188 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
8666175 |
aaaactagaatagagtcagcatggtttacaatacagaaaacagaaa |
8666220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 10511394 - 10511351
Alignment:
| Q |
94 |
aagagtctgagaaggatcatgatcctaaagcaagctttaaagga |
137 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
10511394 |
aagagtctgagaaggatcaggatcctaaagcaagctttgaagga |
10511351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 9337233 - 9337172
Alignment:
| Q |
199 |
agtaacatgttaaacacaaatattatcataaacttcaatgctattagataatgataataaaa |
260 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9337233 |
agtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaa |
9337172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 33236316 - 33236359
Alignment:
| Q |
94 |
aagagtctgagaaggatcatgatcctaaagcaagctttaaagga |
137 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
33236316 |
aagagtctgagaaggatcaggatcctaaagcaagctttgaagga |
33236359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 29214932 - 29214873
Alignment:
| Q |
201 |
taacatgttaaacacaaatattatcataaacttcaatgctattagataatgataataaaa |
260 |
Q |
| |
|
|||||| || |||||||| |||||||||| |||| |||||| |||| ||||||||||||| |
|
|
| T |
29214932 |
taacatattcaacacaaacattatcataaccttcgatgctactagacaatgataataaaa |
29214873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 29464761 - 29464812
Alignment:
| Q |
201 |
taacatgttaaacacaaatattatcataaacttcaatgctattagataatga |
252 |
Q |
| |
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||||||||| |||||| | ||| |||||||||||||||||||||||||||| |
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| T |
29464761 |
taacatgttcaacacatacattgccataaacttcaatgctattagataatga |
29464812 |
T |
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