View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_4 (Length: 641)
Name: NF11426_high_4
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 326 - 627
Target Start/End: Original strand, 5399275 - 5399576
Alignment:
| Q |
326 |
aaatggagagcctgcttatgtaaccatcaaagtagataacaagaaggttgcaaaaacaagcaaagaaagaaaccgtatttggaaccaaacctttcatatt |
425 |
Q |
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| T |
5399275 |
aaatggagagcctgcttatgtaaccatcaaagtagataacaagaaggttgcaaaaacaagcaaagaaagaaaccgtatttggaaccaaacctttcatatt |
5399374 |
T |
|
| Q |
426 |
caatgtgctcatccttctgaatcagttatcaccattacattgaaaacattagattcaaatttaggaaagtaccatatcaaggcccaacaacttttaaagg |
525 |
Q |
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| T |
5399375 |
caatgtgctcatccttctgaatcagttatcaccattacattgaaaacattagattcaaatttaggaaagtaccatatcaaggcccaacaacttttaaagg |
5399474 |
T |
|
| Q |
526 |
aaggaagtataatcaatggaatatttcctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggttcaagcctgcaaa |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5399475 |
aaggaagtataatcaatggaatatttcctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggtttaagcctgcaaa |
5399574 |
T |
|
| Q |
626 |
at |
627 |
Q |
| |
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|| |
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| T |
5399575 |
at |
5399576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 5398921 - 5399229
Alignment:
| Q |
1 |
tcgattggtgaggcatgtaaggattagataccttagtttctttctattttttaagttgttgaattttgacttttaagtgctacattgttttaagaataaa |
100 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5398921 |
tcgattggtgagacatgtaaggattaaataccttagtttctttctattttttaagttgttgaattttgacttttaagtgctacattgttttaagaataaa |
5399020 |
T |
|
| Q |
101 |
aaagttataacaacatagtttatggtttatgaccgcccaatcgaaccagtttatcatcaaactagtttgatttgggtataacgaaaaaattgtgtattat |
200 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5399021 |
aaaattataacaacatagtttatggtttatgacc---caatcgaac----------------tagtttgatttgggtataacgaaaaaattgtgtattat |
5399101 |
T |
|
| Q |
201 |
tttccaactcgaaagagaaagagaaaacattgatgggtttaggtaatgaattttgtctaaaccaacccttgtaacccctgtgtattgtatattgctctac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5399102 |
tttccaactcgaaagagaaagagaaaacattgatgggtttaagtaatgaattttgtctaaaccaacccttgtaacccctatgtattgtatattgctctac |
5399201 |
T |
|
| Q |
301 |
tttaaaagttttgtggtgtaatcataaa |
328 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
5399202 |
tttaaaagttttttggtgtaatcataaa |
5399229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 325 - 625
Target Start/End: Complemental strand, 43054303 - 43054006
Alignment:
| Q |
325 |
taaatggagagcctgcttatgtaaccatcaaagtagataacaagaaggttgcaaaaacaagcaaagaaagaaaccgtatttggaaccaaacctttcatat |
424 |
Q |
| |
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|||||||| ||||||||||||| || ||||| |||| |||||||| || |||||||||| ||||||| | ||| ||||||||||||| ||||| || |
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| T |
43054303 |
taaatggaaagcctgcttatgtgacaatcaagatagacaacaagaaagtggcaaaaacaacacaagaaagtgaacgtgtttggaaccaaacatttcagat |
43054204 |
T |
|
| Q |
425 |
tcaatgtgctcatccttctgaatcagttatcaccattacattgaaaacattagattcaaatttaggaaagtaccatatcaaggcccaacaacttttaaag |
524 |
Q |
| |
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||| |||||||||| |||| ||| |||||||||||| |||||||| | | | | |||||||| | |||||||||||| |||||| || ||| |
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| T |
43054203 |
tcagtgtgctcatctagctgattcaaccatcaccattacactgaaaacaacatgtaccatattaggaaaattccatatcaaggcacaacaa---ttgaag |
43054107 |
T |
|
| Q |
525 |
gaaggaagtataatcaatggaatatttcctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggttcaagcctgcaa |
624 |
Q |
| |
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|||| ||| | || |||||| || |||||||| |||||||||| |||||||| | |||| ||||| | |||||||||||||||||||| |||| |
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| T |
43054106 |
gaagatagtttgattaatggatccttccctctcctaatggaaaatggtaaaccaaatcaagaactaaaattaaggtttatattatggttcaagccagcaa |
43054007 |
T |
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