View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_high_54 (Length: 238)
Name: NF11426_high_54
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44202606 - 44202831
Alignment:
| Q |
1 |
cattattcctctcccatac---attgagttttgggaggatcaatgtagattcactttcaattttccttacaatatacatatttcctatgaacttcaaagc |
97 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44202606 |
cattattcctctctcatacgacattgagttttgggaggatcaacgtagattcactttcaattttccttacaatatacatatttcctatgaacttcaaagc |
44202705 |
T |
|
| Q |
98 |
attatcagtttaggaatgatttatgaagcaggcatattggctgatcaatccagctgacaaccttatagttagaaataacaaaggcatcattctgcagctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44202706 |
attatcagtttaggaatgatttatgaagcaggcatattggctgatcaatccagctgacaaccttatagttagaaataacaaaggcatcattctgcagctt |
44202805 |
T |
|
| Q |
198 |
aattcgtgacttaaaattttgatagc |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
44202806 |
aattcgtgacttaaaattttgatagc |
44202831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 44191474 - 44191558
Alignment:
| Q |
139 |
tgatcaatccagctgacaaccttatagttagaaataacaaaggcatcattctgcagcttaattcgtgacttaaaattttgatagc |
223 |
Q |
| |
|
|||| ||||||||| ||| || ||||||| |||||||||||||| |||||| ||||||| |||||| |||||||| |||||||| |
|
|
| T |
44191474 |
tgataaatccagctaacagccatatagttggaaataacaaaggcctcattcaacagcttatttcgtggcttaaaatattgatagc |
44191558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 44191371 - 44191420
Alignment:
| Q |
52 |
tttcaattttccttacaatatacatatttcctatgaacttcaaagcatta |
101 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
44191371 |
tttcaattttacttacagcatacatatttcctatgaactttgaagcatta |
44191420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University