View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_56 (Length: 237)
Name: NF11426_high_56
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49370127 - 49369907
Alignment:
| Q |
1 |
tcgggtgcctgttcgagctagttag-tactcatcatccataccataccaatcacttgcgctagacatttacgaaatgaaatgaaatactatctaatcaag |
99 |
Q |
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| T |
49370127 |
tcgggtgccggttcgagctagttagttagtactcat-cata-cataccaatcacttgcgctagacatttacgaaatgaaatgaaatactatctaatcaag |
49370030 |
T |
|
| Q |
100 |
gcatgggggttagattttaacttagtgatgtagggtcaagtggaatggactgcttagatttgaagaacaagtaaacaaaatgaatttcaaagaaaaagcc |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49370029 |
gcat-ggggttagattttaacttagtgatgtagggtcaagtggaatggactgcttagatttgaagaacaagtaaacaaaatgaatttcaaagaaaaagcc |
49369931 |
T |
|
| Q |
200 |
cttggcaattttggaagaaaaaac |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
49369930 |
cttggcaattttggaagaaaaaac |
49369907 |
T |
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