View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_11 (Length: 490)
Name: NF11426_low_11
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_11 |
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| [»] scaffold0027 (3 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 156 - 471
Target Start/End: Complemental strand, 46461 - 46148
Alignment:
| Q |
156 |
tttagcatttttcttgaacagactaaactaggaaaataaaatgttaataagaacgaattaacttctcggtcaaatttcacaaatgagttgctatgttact |
255 |
Q |
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| T |
46461 |
tttagcatttttcttgaacagactaaactaggaaaataaaatgttaataagagcgaattaacttctcggtcaaatttcacaaatgagttgctatcttact |
46362 |
T |
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| Q |
256 |
caatttctctttcatannnnnnnnattnnnnnnnntat--tcatttgaatcggtagataaaatcaagaacaataaaaattttgtgtcattgaaacttaaa |
353 |
Q |
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| T |
46361 |
cggtttctctttcatattttttt-attaaaaaaaatatattcatttaaatcggtagataaaatcaacaacaataaaaattttgtgtcattgaaacttaaa |
46263 |
T |
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| Q |
354 |
agatgaatttgcaactaaatttacatcattgaagtcaatatcataaatcggtataataatgcctacaaaaagttacatgattaaagcgatctaaatacgc |
453 |
Q |
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| T |
46262 |
agatgaaattgcaactaaatttacatcattgaagtcaatatcataaatcggta---taatgcctacaaaaagttacatgattaaagcgatctaaatacgc |
46166 |
T |
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| Q |
454 |
atttgaatatgtagtgtt |
471 |
Q |
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| T |
46165 |
atttgaatatgtagtgtt |
46148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 46625 - 46533
Alignment:
| Q |
66 |
gccgcaaagcacgagcccgagtgaatagaatgaagctgctgaatgatagaatgaattacgcttcagttcttcaatttggtgaaggtttggttt |
158 |
Q |
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| T |
46625 |
gccgcaaagcacgagccggagtgaatagaatgaagctgctgaatgatgagatgaattacgcttcagttcttcaatttggtgaaggtttggttt |
46533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 46849 - 46777
Alignment:
| Q |
1 |
agggctacgacaacgaggagataacatgcagacgcacaaaaatggagggaacacgacgtcgataagccgcaaa |
73 |
Q |
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| T |
46849 |
agggctacgacaacgaggagatgacatgcagacgcacaaaaatggagggaacacgacgtcgataagccgcaaa |
46777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 26605301 - 26605358
Alignment:
| Q |
3 |
ggctacgacaacgaggagataacatgcagacgcacaaaaatggagggaacacgacgtcg |
61 |
Q |
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| T |
26605301 |
ggctacaacaccgaggagatgacacgcagacgcac-aaaatggagggaacacgacgtcg |
26605358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 51628989 - 51629039
Alignment:
| Q |
350 |
taaaagatgaatttgcaactaaatttacatcattgaagtcaatatcataaa |
400 |
Q |
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| T |
51628989 |
taaaagatgaatttgcaaataaattcacatcatttaagttaatagcataaa |
51629039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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