View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_low_15 (Length: 463)
Name: NF11426_low_15
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_15 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 41675262 - 41674816
Alignment:
| Q |
1 |
agagcaggagaaaacattaacataataaaaacttggctattgaataggggaattgaataagcctagcaaaagaatttgaagtagaagatggtaataatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675262 |
agagcaggagaaaacattaacataataaaa-cttggatattgaataggggaattgaataagcctagcaaaagaatttgaagtagaagatggtaataatgc |
41675164 |
T |
|
| Q |
101 |
atacgaagatagtaagaatttagaaaatagggaatgaaaaggaaaggaatagataccagaggcagaggcagaggcattgtgaggagtcaagcgaaaggca |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
41675163 |
atatgaagatagtaagaatttagaaaatagggaatgaaaaggaaaggaatagataccagaggcagaggcagaggcagagtgaggagtcaagcgaaaggaa |
41675064 |
T |
|
| Q |
201 |
acaagagaaccaaaatcgtcaatctctctagataataaacgtccctcatcttcttcttcatcttgatgacggagctgttgggtttcgtcttcgaaggaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675063 |
acaagagaaccaaaatcgtcaatctctctggataataaacgtccctcatct---tcttgatcttgatgacggagctgttgggtttcgtcttcgaaggaaa |
41674967 |
T |
|
| Q |
301 |
taggtccgtcttgtgaagcaccggaaatagagcgtaaggtagcatttttgataggttttttgagcttagaagggaaacccaattgaggtaagaatcgtga |
400 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41674966 |
taggtccgtcttgtgaagaaacggaaatagagcgtaaggtagca------------tttttgagcttagaagggaaaccgaattgaggtaagaatcgtga |
41674879 |
T |
|
| Q |
401 |
ggaattggtggtactatgagcatgaggtcgagttggagctgaagatgcacggggatgatggag |
463 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41674878 |
ggaattggtggtactatgaggatgaggtcgagttggagctgaagatgcacggggatgatggag |
41674816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University