View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_low_16 (Length: 456)

Name: NF11426_low_16
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_low_16
NF11426_low_16
[»] chr7 (24 HSPs)
chr7 (18-176)||(21786056-21786214)
chr7 (18-180)||(21714731-21714893)
chr7 (294-437)||(21786332-21786474)
chr7 (18-166)||(21788774-21788922)
chr7 (86-180)||(21772551-21772645)
chr7 (84-180)||(21726432-21726528)
chr7 (21-152)||(15714168-15714305)
chr7 (58-166)||(21664683-21664791)
chr7 (59-165)||(21705199-21705305)
chr7 (21-152)||(21647401-21647538)
chr7 (51-150)||(21764601-21764703)
chr7 (50-166)||(21792549-21792665)
chr7 (109-180)||(21682241-21682312)
chr7 (51-166)||(21629534-21629655)
chr7 (51-166)||(21652732-21652853)
chr7 (22-62)||(21772513-21772553)
chr7 (351-437)||(21726695-21726792)
chr7 (55-132)||(21807657-21807734)
chr7 (401-437)||(21727263-21727299)
chr7 (398-437)||(21682680-21682719)
chr7 (50-151)||(21657010-21657114)
chr7 (351-437)||(21772815-21772911)
chr7 (51-171)||(21746077-21746200)
chr7 (397-437)||(21716734-21716773)
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-80)||(25906-25968)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 21786056 - 21786214
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786056 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 21786155  T
Q  118 tgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatatt 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  21786156 tgatcttcagcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatatt 21786214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 21714731 - 21714893
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 117  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21714731 cagagaagaagaaggacatggttccaaaaagaaaagcagaaagagagcatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 21714830  T
Q  118 tgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  21714831 tgatcttcaacgtaatatcatcctcattacatctacaaccaaggtacaacagaaatattagag 21714893  T

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Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 294 - 437
Target Start/End: Original strand, 21786332 - 21786474
Alignment:
Q  294 attagtttaagtttacctatcattaattatcactatttcaacttttattagtttaagcataatttctatttgtggtatactaacatgtgcccttagtgcg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |    
T  21786332 attagtttaagtttacctatcattaattatcactatttcaacttttattagtttaagcataatttatatttgtggtatactaacatgtgcccttagtttg 21786431  T
Q  394 tactttccatattttaattacaaggtggaggatagtgattagag 437  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  21786432 tactttccatattttaattacaaagtgga-gatagtgattagag 21786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 21788774 - 21788922
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 117  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||  ||||||||| |||||||||||||||  |||||||||    
T  21788774 cagataaggagaaggacatggttccaaaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacacccactcatcttct 21788873  T
Q  118 tgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaa 166  Q
    ||||||||||||||| |||||||||| ||||||||   |||||||||||    
T  21788874 tgatcttcagcgtaaaatcatcctcactacatctaattccaaggtacaa 21788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 21772551 - 21772645
Alignment:
Q  86 gagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||    
T  21772551 gagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaataccatcctcattacatctacaaccaaggtacaacaaaaatattagag 21772645  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 21726432 - 21726528
Alignment:
Q  84 atgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    ||||||| |||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  21726432 atgagtcccagtcaaagacaccctttcatcttcttgatcgtcggcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatattagag 21726528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 15714168 - 15714305
Alignment:
Q  21 agaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac------gaaatgagtcacagttagagacaccctttcatct 114  Q
    ||||||||||| ||  ||||||||| ||||||||||||||| || ||||| |||||||||      ||||||||||||||| ||||||||||  ||||||    
T  15714168 agaaggagaagaacggggttccaaacagaaaaggagaaggacaatatagtgtatcaataccattacgaaatgagtcacagtcagagacacccactcatct 15714267  T
Q  115 tcttgatcttcagcgt-aatatcatcctcattacatcta 152  Q
    ||||||||| |||||| ||||| ||||||||||||||||    
T  15714268 tcttgatctacagcgtaaatat-atcctcattacatcta 15714305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 21664683 - 21664791
Alignment:
Q  58 aggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataacc 157  Q
    ||||||||||| | ||||||||| ||||||||||||| | |||||||||  ||||||||||||||||| |||||| |||| |||||||  ||||| | ||    
T  21664683 aggagaacatattgtatcaatactaaatgagtcacagctggagacacccactcatcttcttgatcttctgcgtaaaatcaccctcattggatctaaaccc 21664782  T
Q  158 aaggtacaa 166  Q
    |||||||||    
T  21664783 aaggtacaa 21664791  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 21705199 - 21705305
Alignment:
Q  59 ggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataacca 158  Q
    |||||||||||| ||||||||| |||||||||||||| ||| ||||||   ||||||||||||||||| ||||| ||||||||||  |||||||   |||    
T  21705199 ggagaacatagtgtatcaataccaaatgagtcacagtcagaaacacccacacatcttcttgatcttcaacgtaaaatcatcctcaccacatctaattcca 21705298  T
Q  159 aggtaca 165  Q
    |||||||    
T  21705299 aggtaca 21705305  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 21647401 - 21647538
Alignment:
Q  21 agaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaa------tacgaaatgagtcacagttagagacaccctttcatct 114  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||| ||| ||||||      ||| || |||||| || | ||||||||||  ||||||    
T  21647401 agaaggagaaggaaatggtttcaaaaggaaaaggagaaggagaacacagtgtatcaataccattaccaagtgagtcccaatcagagacacccactcatct 21647500  T
Q  115 tcttgatcttcagcgtaatatcatcctcattacatcta 152  Q
    | ||||||||||||||||  ||||||||| | ||||||    
T  21647501 ttttgatcttcagcgtaaactcatcctcaatccatcta 21647538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 21764601 - 21764703
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacgaa---atgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattac 147  Q
    |||||||||||||||||||| ||||||||  ||   |||||||||||| ||||||||||  ||||||||| |||||||||| |||  ||||||||| |||    
T  21764601 aaggagaaggagaacatagtgtatcaataataacaaatgagtcacagtcagagacacccactcatcttctagatcttcagcataaagtcatcctcactac 21764700  T
Q  148 atc 150  Q
    |||    
T  21764701 atc 21764703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 21792549 - 21792665
Alignment:
Q  50 aaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacat 149  Q
    |||||||||||| |||||||| ||||||| | | ||||||||| ||||||| |||||  ||||||||||||||| || ||||| || ||||||| | |||    
T  21792549 aaaggagaaggacaacatagtgtatcaatgccagatgagtcactgttagagccacccaatcatcttcttgatctgcatcgtaaaatgatcctcactgcat 21792648  T
Q  150 ctataaccaaggtacaa 166  Q
    |||   |||||||||||    
T  21792649 ctaattccaaggtacaa 21792665  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 21682241 - 21682312
Alignment:
Q  109 tcatcttcttgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| || | |||| ||||||    
T  21682241 tcatcttcttgatcttcagcgtaatatcatcctcattaaatctacacccaaggtataatagaaatcttagag 21682312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 21629534 - 21629655
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacga------aatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcat 144  Q
    ||||||||||||||||||||  |||||||| |      ||||||||||||||||||| |||   |||||||||||||||||| || ||  |||||||||     
T  21629534 aaggagaaggagaacatagtgcatcaataccagtaccaaatgagtcacagttagagaaaccaactcatcttcttgatcttcaacgcaaagtcatcctcac 21629633  T
Q  145 tacatctataaccaaggtacaa 166  Q
    ||||||||   |||||||||||    
T  21629634 tacatctaattccaaggtacaa 21629655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 21652732 - 21652853
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacg------aaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcat 144  Q
    |||||||||||||||||||| |||| ||||       |||||||||||||| | ||||||||  ||||||||||||||||| || ||| |||||||| |     
T  21652732 aaggagaaggagaacatagtgtatcgataccttaaccaaatgagtcacagtcaaagacacccactcatcttcttgatcttctgcataaaatcatcctaac 21652831  T
Q  145 tacatctataaccaaggtacaa 166  Q
    ||||||||   |||||||||||    
T  21652832 tacatctaattccaaggtacaa 21652853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 21772513 - 21772553
Alignment:
Q  22 gaaggagaaggacatggttccaaaaagaaaaggagaaggag 62  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21772513 gaagaagaaggacatggttccaaaaagaaaaggagaaggag 21772553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 21726695 - 21726792
Alignment:
Q  351 cataatttctatttgtggtatacta---acatgtgcccttagtgc--------gtactttccatattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||| ||||||| ||   |||||||||||||||||        ||| ||| |||||||||||||||| ||||||||||||||||||||    
T  21726695 cataatttctatttttggtatattatgaacatgtgcccttagtgcacatgttagtatttttcatattttaattacaaagtggaggatagtgattagag 21726792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 21807734 - 21807657
Alignment:
Q  55 agaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaa 132  Q
    ||||| |||||||||| ||||||||  ||||||||  |||| |||||||||   ||||||||||||| ||||||||||    
T  21807734 agaagaagaacatagtgtatcaataacaaatgagtggcagtcagagacaccaactcatcttcttgatgttcagcgtaa 21807657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 21727263 - 21727299
Alignment:
Q  401 catattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||||| ||||||||||||||||||||    
T  21727263 catattttaattacaaagtggaggatagtgattagag 21727299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 21682680 - 21682719
Alignment:
Q  398 ttccatattttaattacaaggtggaggatagtgattagag 437  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  21682680 ttccatattttaattacaaagtggaggatagggattagag 21682719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 21657010 - 21657114
Alignment:
Q  50 aaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagaca---ccctttcatcttcttgatcttcagcgtaatatcatcctcatta 146  Q
    |||||||| ||||||||||||  |||||||  | |||||||||| | |||||||   |||  |||||||||||||||||| || ||  ||||||||| ||    
T  21657010 aaaggagatggagaacatagtgcatcaatagcagatgagtcacaatcagagacaatacccactcatcttcttgatcttcaacggaaactcatcctcacta 21657109  T
Q  147 catct 151  Q
    |||||    
T  21657110 catct 21657114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 21772815 - 21772911
Alignment:
Q  351 cataatttctatttgtggtatacta---acatgtgcccttagtgc--------gtactttccatattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||| ||||||| ||   |||||||||||||||||        ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  21772815 cataatttctatttttggtatattatgaacatgtgcccttagtgcacatgttagtattttccatattttaattacaaagtgga-gatagtgattagag 21772911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 21746077 - 21746200
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagac---accctttcatcttcttgatcttcagcgtaatatcatcctcattac 147  Q
    |||||| ||||||||||| | ||||||||  |||||||||||| | ||||||   ||||  ||||||||||||||||| || |||  ||| ||||| |||    
T  21746077 aaggaggaggagaacataatgtatcaataacaaatgagtcacattcagagacaatacccactcatcttcttgatcttctgcataaactcaacctcactac 21746176  T
Q  148 atctataaccaaggtacaacacaa 171  Q
    ||| |   ||||||||||| ||||    
T  21746177 atccaagtccaaggtacaatacaa 21746200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Original strand, 21716734 - 21716773
Alignment:
Q  397 tttccatattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  21716734 tttccatattttaattacaaagtgga-gatagtgattagag 21716773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 25906 - 25968
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac 80  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||||| ||||| |||||||||    
T  25906 cagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaatatagtgtatcaatac 25968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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