View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_19 (Length: 428)
Name: NF11426_low_19
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 410
Target Start/End: Original strand, 29493128 - 29493535
Alignment:
| Q |
4 |
tgcggacgtaggaccttggactgtgctctaaggtctcaggttcgaatccttttggtgccaatttccgtgggatagtccatagctttgactttaattgggt |
103 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29493128 |
tgcggacttaggaccttggactgtgctctatggtctcaggttcgaatccttttggtgcctatttccgtgggatagtccatagctttgactttaattgggt |
29493227 |
T |
|
| Q |
104 |
tccccgctagtggaccgtgggattggtcctagattagtcggtcctcggaccggatactaagttttcaaaacc-nnnnnnnntaaatcaagtgttctgtag |
202 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29493228 |
tccccgctagtggacggtgggattggtcctagattagtcggtcctcggaccggatactaagttttcaaaaccaaaaaaaaataaatcaagtgttctgtag |
29493327 |
T |
|
| Q |
203 |
gaagaatgaactcttagagtgtgttacttaatagttctgttaatttatctannnnnnnnnnnaaactgttgcatattttactgtttctttgagatgcagt |
302 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29493328 |
gaagaatgaactcttcgagtgtgttacttaatagttctgttaatttatctatttttttttttaaactgttgcatattttactgtttctttgagatgcagt |
29493427 |
T |
|
| Q |
303 |
ttcacaatatgttagtattaggttacaagtttgtattttggtttttctgatttccttcatggaacagggaaattcgagtgtgacgtcgcaggctgagaat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29493428 |
ttcacaatatgttagtattaggttacaagtttgtattttggtttttctgatttccttcatggaacagggaaattcgagtgtgacgtcgcaggctgagaat |
29493527 |
T |
|
| Q |
403 |
ggttttat |
410 |
Q |
| |
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|||||||| |
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|
| T |
29493528 |
ggttttat |
29493535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 27746482 - 27746441
Alignment:
| Q |
33 |
aaggtctcaggttcgaatccttttggtgccaatttccgtggg |
74 |
Q |
| |
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| T |
27746482 |
aaggtctcaggttcgattccctttggtgccaatttcggtggg |
27746441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 32059587 - 32059546
Alignment:
| Q |
33 |
aaggtctcaggttcgaatccttttggtgccaatttccgtggg |
74 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
32059587 |
aaggtctcaggttcgattccttctggtgccaatttcggtggg |
32059546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 48977438 - 48977479
Alignment:
| Q |
33 |
aaggtctcaggttcgaatccttttggtgccaatttccgtggg |
74 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||||| |
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|
| T |
48977438 |
aaggtctcaggttcgattccttctggtgccaatttcggtggg |
48977479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 53424322 - 53424282
Alignment:
| Q |
34 |
aggtctcaggttcgaatccttttggtgccaatttccgtggg |
74 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||| |
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|
| T |
53424322 |
aggtctcaggttcgattccctttggtgccaatttcggtggg |
53424282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 15038009 - 15038050
Alignment:
| Q |
33 |
aaggtctcaggttcgaatccttttggtgccaatttccgtggg |
74 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
15038009 |
aaggtctcaggttcgattccctttggtgccaatttcggtggg |
15038050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 44946199 - 44946159
Alignment:
| Q |
34 |
aggtctcaggttcgaatccttttggtgccaatttccgtggg |
74 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
44946199 |
aggtctcaggttcgattccctttggtgccaatttcggtggg |
44946159 |
T |
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