View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_low_2 (Length: 797)
Name: NF11426_low_2
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 400 - 787
Target Start/End: Original strand, 39209354 - 39209737
Alignment:
| Q |
400 |
atcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgtac |
499 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39209354 |
atcatttttaactgcagttcgccgggcgggaaaaatttaatttatgaatttttgggacaaaattacgttggtacccttatgttgtaaaacatgcatgtac |
39209453 |
T |
|
| Q |
500 |
catacattgctcgccatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgc |
599 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39209454 |
catacattgctcgcaatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcataggtgatgatgataactccacattggacggtgc |
39209553 |
T |
|
| Q |
600 |
acacacactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
699 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39209554 |
atac----tgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
39209649 |
T |
|
| Q |
700 |
tccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
787 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39209650 |
tccctcacactgttttccccttctttatcgtccttcccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
39209737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 335 - 787
Target Start/End: Complemental strand, 27514589 - 27514129
Alignment:
| Q |
335 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
27514589 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttcaactgcagttaatcgggcgggaaaaa |
27514490 |
T |
|
| Q |
435 |
atttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgt-accatacattgctcgccatgttggaggatggaaatt |
533 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27514489 |
tttaattaatgagtttttgggacaaaattacgtttatacccttatgttgtaaaacttgcatgtaaccatacattgctcgccatgttggagaatggaaatt |
27514390 |
T |
|
| Q |
534 |
tcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgcacacacactgcacaagagg-tgaccaattgatgc |
632 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
27514389 |
tcaaacctgctgcatcacgttgtttatgctcaggggtcatgatgataactccacattggacggtg----cacactgcacaagaggttgaccaattgctgc |
27514294 |
T |
|
| Q |
633 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataa----------aggtgtcttctccctcacactgttttccccttc |
722 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
27514293 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcatcaccaacataaatccaaacctaagtgtcttctccctcacactgttttccccttc |
27514194 |
T |
|
| Q |
723 |
tttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
27514193 |
tttatcgtcctttccctcacctccttctccttgccaccatccgatcttcttctctttgttctctg |
27514129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 27637737 - 27637431
Alignment:
| Q |
17 |
agaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637737 |
agaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcat |
27637638 |
T |
|
| Q |
117 |
ctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgatttaaaagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
27637637 |
ctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattatcgagattcagaattcgatttaaaatt |
27637538 |
T |
|
| Q |
217 |
gatattattttcaaaactgttattacaatagatcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcattt |
316 |
Q |
| |
|
||||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27637537 |
gatattactgtcaaaaatgttattacaatagctcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatgatgtttcattt |
27637438 |
T |
|
| Q |
317 |
attttgt |
323 |
Q |
| |
|
||||||| |
|
|
| T |
27637437 |
attttgt |
27637431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 37353930 - 37353626
Alignment:
| Q |
17 |
agaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcat |
116 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
37353930 |
agaagtaagagctcaaaagcatgtaagacgtgaaaagaatttgttttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcat |
37353831 |
T |
|
| Q |
117 |
ctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgatttaaaagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||| | | |
|
|
| T |
37353830 |
ctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatctgtggaatggcaaagaagggtattatcgagattcaaaatttgatttaagatt |
37353731 |
T |
|
| Q |
217 |
gatattattttcaaaactgttattacaatagatcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcattt |
316 |
Q |
| |
|
|||||| | |||||| ||| ||||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
37353730 |
aatattactgtcaaaaaggttggtacaacaactaagctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttactttt |
37353631 |
T |
|
| Q |
317 |
atttt |
321 |
Q |
| |
|
||||| |
|
|
| T |
37353630 |
atttt |
37353626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 37365904 - 37365600
Alignment:
| Q |
17 |
agaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcat |
116 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
37365904 |
agaagtaagagctcaaaagcatgtaagacgtgaaaagaatttgttttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcat |
37365805 |
T |
|
| Q |
117 |
ctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgatttaaaagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||| | | |
|
|
| T |
37365804 |
ctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatctgtggaatggcaaagaagggtattatcgagattcaaaatttgatttaagatt |
37365705 |
T |
|
| Q |
217 |
gatattattttcaaaactgttattacaatagatcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcattt |
316 |
Q |
| |
|
|||||| | |||||| ||| ||||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
37365704 |
aatattactgtcaaaaaggttggtacaacaactaagctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttactttt |
37365605 |
T |
|
| Q |
317 |
atttt |
321 |
Q |
| |
|
||||| |
|
|
| T |
37365604 |
atttt |
37365600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 12292496 - 12292680
Alignment:
| Q |
29 |
tgaaaagcgtgtaagacgtgaaaacaatg---tgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttca |
125 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||| | | |||||||||| | |||||||||||||| |||||| |
|
|
| T |
12292496 |
tgaaaagcgtgtcagacgtggaaacaatactatgttttgtccaaagtgtaacacaaactcctcagatgtcttatttataccatgtaggcatctttcttca |
12292595 |
T |
|
| Q |
126 |
tgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgattt |
210 |
Q |
| |
|
|||||||||||| | ||||||||| || | |||||||| ||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
12292596 |
tgcaaagcatgtgaagctttactcgaagcctgtccaatgtgtggaatgaaaaagaagggtgttattgagattcagaatttgattt |
12292680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 12242822 - 12242929
Alignment:
| Q |
92 |
tgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattatt |
191 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||| | |||| |||| || |||||||||| |||||||||| |||||| ||| ||||| |
|
|
| T |
12242822 |
tgtcttatttctgccatgtagacatctttcttcatgcaaagcgtgtgaagcttcactcaaagcttgtccaatctgtggaatggaaaagaatggtgttatt |
12242921 |
T |
|
| Q |
192 |
gagattca |
199 |
Q |
| |
|
|| ||||| |
|
|
| T |
12242922 |
gaaattca |
12242929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 352 - 479
Target Start/End: Original strand, 23016965 - 23017092
Alignment:
| Q |
352 |
tggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttt |
451 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||| |||| |||| |
|
|
| T |
23016965 |
tggaacacaaacctgcaagttttccctaatttaatcctttgaaaatccatcattttcaactgcagttcatcgggcgggaaaaatttaattaatgagtttt |
23017064 |
T |
|
| Q |
452 |
tgggacaaaattacgttgatacccttat |
479 |
Q |
| |
|
|||||||||||||| || |||||||||| |
|
|
| T |
23017065 |
tgggacaaaattacatttatacccttat |
23017092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 34697936 - 34697785
Alignment:
| Q |
59 |
gttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
158 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |
|
|
| T |
34697936 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactccaaacttgt |
34697837 |
T |
|
| Q |
159 |
ccaatttgtggaatggcaaagaagggtattattgagattcagaattcgattt |
210 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||||||| |||| ||| |||| |
|
|
| T |
34697836 |
ccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaattt |
34697785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 34720348 - 34720197
Alignment:
| Q |
59 |
gttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
158 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |
|
|
| T |
34720348 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactccaaacttgt |
34720249 |
T |
|
| Q |
159 |
ccaatttgtggaatggcaaagaagggtattattgagattcagaattcgattt |
210 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||||||| |||| ||| |||| |
|
|
| T |
34720248 |
ccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaattt |
34720197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 27910007 - 27909926
Alignment:
| Q |
120 |
tcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcaga |
201 |
Q |
| |
|
||||||||||||| ||| | ||||||||| || ||||||||| |||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
27910007 |
tcttcatgcaaagtgtgtgaagctttactcgaagtttgtccaatatgtggaatggaaaagaaggatgttattgagattcaga |
27909926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 36407074 - 36407015
Alignment:
| Q |
336 |
atcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| |
|
|
| T |
36407074 |
atcataatattataaatggaacaccaagctgcaaatttgccctaatttgttcctttgaaa |
36407015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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