View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_22 (Length: 421)
Name: NF11426_low_22
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 53002044 - 53001648
Alignment:
| Q |
16 |
ctaagtactttattttgatggaatattcttaagtacttaaacatgtaatcttttactagttaacaaaaattatggttttgtgaagtgacacaccctaaca |
115 |
Q |
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| T |
53002044 |
ctaagtactttattttgatggaatattcttaagtacttaaacatgtaatcttttactagttaacaaaaattatggttttgtgaagtcacacaccctaaca |
53001945 |
T |
|
| Q |
116 |
tgcttagtgtcccaccggaagctaccaactttgtattgtaccactcaatacttaccattctctattttaaaactaattaaaagctcaaactatttgtagg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53001944 |
tgcttagtgtcccaccggaagctaccaactttgtattgtaccactcaatacttaccattctctattttaaaactaattaaaagttcaaactatttgtagg |
53001845 |
T |
|
| Q |
216 |
tacaacaaattttaatttccaccctggattggaccctctgagcatataatatggattaaatagtttttgtgttgcaaaataacgaaatttgatgttgata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53001844 |
tacaacaaattttaatttccaccctggattggaccctctgagcatataataaggattaaatagtttttgtgttgcaaaataacgaaatttgatgttgata |
53001745 |
T |
|
| Q |
316 |
tattgatgtatttatatacttcactttgatcgtgtcatgcagcagcagaagcacatgt-ggctgtgcacgttagaggtacatccgtaaagtcctttg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53001744 |
tattgatgtatttatatacttcactttgatcgtgtcatgcagcagcagaagcacatgtgggctgtgcacgttagaggtacatccgtaaagtcctttg |
53001648 |
T |
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