View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_low_23 (Length: 417)

Name: NF11426_low_23
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_low_23
NF11426_low_23
[»] chr2 (5 HSPs)
chr2 (253-402)||(8019915-8020064)
chr2 (130-253)||(8019760-8019883)
chr2 (254-390)||(22391284-22391420)
chr2 (44-116)||(8019573-8019645)
chr2 (130-229)||(22391113-22391209)
[»] chr3 (58 HSPs)
chr3 (254-402)||(28132105-28132253)
chr3 (254-402)||(28510623-28510771)
chr3 (254-402)||(28081898-28082046)
chr3 (254-402)||(28147889-28148037)
chr3 (254-402)||(28183922-28184070)
chr3 (254-402)||(27975507-27975655)
chr3 (254-402)||(28002333-28002481)
chr3 (254-402)||(28159358-28159506)
chr3 (1-113)||(28183396-28183508)
chr3 (254-402)||(28481451-28481599)
chr3 (254-380)||(27918527-27918653)
chr3 (307-402)||(28053683-28053778)
chr3 (307-402)||(28064108-28064203)
chr3 (254-356)||(17746167-17746269)
chr3 (254-356)||(19047487-19047589)
chr3 (254-402)||(27460997-27461142)
chr3 (254-356)||(27392230-27392332)
chr3 (254-402)||(11418886-11419034)
chr3 (254-402)||(28035583-28035731)
chr3 (8-116)||(28147198-28147307)
chr3 (254-349)||(12146179-12146274)
chr3 (24-116)||(17746683-17746774)
chr3 (24-116)||(19048003-19048094)
chr3 (1-100)||(28482365-28482461)
chr3 (1-100)||(28511177-28511273)
chr3 (254-354)||(18026466-18026566)
chr3 (254-356)||(27347569-27347671)
chr3 (45-116)||(28081414-28081487)
chr3 (254-338)||(26114998-26115082)
chr3 (254-338)||(26142310-26142394)
chr3 (254-338)||(26210106-26210190)
chr3 (254-349)||(27376362-27376457)
chr3 (165-229)||(28081765-28081826)
chr3 (129-228)||(27918358-27918454)
chr3 (51-116)||(27974226-27974291)
chr3 (254-338)||(26180615-26180699)
chr3 (45-113)||(27918045-27918113)
chr3 (259-338)||(26237350-26237429)
chr3 (159-229)||(18026641-18026708)
chr3 (254-338)||(26131578-26131662)
chr3 (156-229)||(28147744-28147814)
chr3 (157-229)||(28131961-28132030)
chr3 (254-304)||(28481909-28481959)
chr3 (156-229)||(17746344-17746414)
chr3 (156-229)||(19047664-19047734)
chr3 (165-222)||(26180769-26180823)
chr3 (156-229)||(27461214-27461284)
chr3 (156-229)||(27975362-27975432)
chr3 (165-220)||(26210262-26210314)
chr3 (165-220)||(26237506-26237558)
chr3 (54-103)||(26627178-26627227)
chr3 (75-116)||(28053208-28053249)
chr3 (75-116)||(28063633-28063674)
chr3 (159-229)||(11418747-11418814)
chr3 (72-116)||(18026977-18027021)
chr3 (72-116)||(27392719-27392763)
chr3 (13-61)||(28053163-28053211)
chr3 (13-61)||(28063588-28063636)
[»] scaffold0257 (2 HSPs)
scaffold0257 (254-402)||(17484-17632)
scaffold0257 (1-96)||(16978-17073)
[»] scaffold0043 (2 HSPs)
scaffold0043 (249-390)||(54687-54828)
scaffold0043 (135-220)||(54907-54989)
[»] chr7 (2 HSPs)
chr7 (254-402)||(8693284-8693432)
chr7 (130-220)||(8693519-8693606)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 253 - 402
Target Start/End: Original strand, 8019915 - 8020064
Alignment:
Q  253 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019915 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 8020014  T
Q  353 atgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020015 atgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 8020064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 8019760 - 8019883
Alignment:
Q  130 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019760 taagatgtctacctcacttacttaagatgagaatcaaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 8019859  T
Q  230 aacatgctttccaaagctaggaac 253  Q
    ||||||||||||||||||||||||    
T  8019860 aacatgctttccaaagctaggaac 8019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 254 - 390
Target Start/End: Original strand, 22391284 - 22391420
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||  | ||||| ||||||||| |||||||||||||||||||| ||||||  |     
T  22391284 atgtctttccaatctccatatgtaaagagcttcctgagctagaggctctagtgataagtgaagcatataagctagaggaaatatttgtatgtgaagaagg 22391383  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgta 390  Q
    |||||| |||||  | || |||||||| |||||||||    
T  22391384 tgatcagaaagtcaatatgccaaatctaaaagttgta 22391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 8019573 - 8019645
Alignment:
Q  44 actttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    |||| |||||||||||  ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  8019573 acttggttattcttatcatatgcatgtgtttatttcccatttatttattgcaggaattgaggaggaatgtgga 8019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 22391113 - 22391209
Alignment:
Q  130 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    |||| |||||||| || || ||| | |||||||| |||||||||||||| || ||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  22391113 taaggtgtctaccacagttgcttgatatgagaattgaagaatgcaaagaattgaagcatattattga---agatgatttggagaataaaaaatcctcaaa 22391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28132105 - 28132253
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  28132105 atgtctttccaatctccgtatgtaaagagcttcctgagctatattatctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtga 28132204  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132205 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 28132253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 254 - 402
Target Start/End: Complemental strand, 28510771 - 28510623
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28510771 atgtctttccaatctccatatctaaagagcttccagagctaattgttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaaggtga 28510672  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28510671 tgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaat 28510623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28081898 - 28082046
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  28081898 atgtctttccaatctccgtatataaagagcttcctgagctaaattatctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtga 28081997  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||||||||||||| ||||   | ||||| |||||||||||    
T  28081998 tgatcacaaagtggagattccatatctacgatttgtagtatttgaaaat 28082046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28147889 - 28148037
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| ||||| |||||||||||||||||||||||  |||    
T  28147889 atgtgtttccaatctccatatctaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttga 28147988  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28147989 tgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaat 28148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28183922 - 28184070
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28183922 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtga 28184021  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||||||||||||||||||  ||  |||| |||||||||||    
T  28184022 tgatcacaaagtggagattccaaatctagaatgtgtagtatttgaaaat 28184070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 27975507 - 27975655
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||||||||||||||| ||||||| |   |||  | ||||||||||||  |||||||||||||||||||||||||||||||||    
T  27975507 atgtgtttccaatctccatatgtaaagagcttcttgagctagaggttctcttgataagagaagcagctgagctagaggaaatatttgtaagtgaaggtga 27975606  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27975607 tgatcacaaagtggagattccaaatctgatagttgtaatatttgaaaat 27975655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28002333 - 28002481
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||    
T  28002333 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcagacgaggtagaggaaatatttggaagtgaaggtga 28002432  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||| |||||||||||||| ||| ||||| |||||||||||    
T  28002433 tgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaat 28002481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28159358 - 28159506
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| || |||||||||||||||||||||||| |||||||||    
T  28159358 atgtatttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagctagaggaaatatttgtaattgaaggtga 28159457  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||| |||||| |||||||||||||  ||  |||| |||||||||||    
T  28159458 tgatcagaaagtgaagattccaaatctagaatgtgtagtatttgaaaat 28159506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 28183396 - 28183508
Alignment:
Q  1 aaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaat 100  Q
    ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28183396 aaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatgcatgtgtttatttcccattcatttattgcaggaat 28183495  T
Q  101 tgagggggaatgt 113  Q
    |||| ||||||||    
T  28183496 tgagtgggaatgt 28183508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 402
Target Start/End: Complemental strand, 28481599 - 28481451
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||| ||||||||||||  ||||||||  ||| ||||||||||||||| | ||| | ||||||||||||| ||||||||||||    
T  28481599 atgtgtttccaatctccatatctaaagagcttccaaagctaaatgttctcatcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtga 28481500  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||| |||||||||||||| ||| ||||| |||||||||||    
T  28481499 tgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaat 28481451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 254 - 380
Target Start/End: Original strand, 27918527 - 27918653
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||  | |||||||||||| ||||||| || |||||||||| || |||||||||    
T  27918527 atgtctttccaatctccatatgtaaagaccttcctgagctaaagtgtctagtgataagagaagcagatgagctggatgaaatatttgcaaatgaaggtga 27918626  T
Q  354 tgatcacaaagtggagattccaaatct 380  Q
    |||||| ||||||||||||||||||||    
T  27918627 tgatcagaaagtggagattccaaatct 27918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 28053683 - 28053778
Alignment:
Q  307 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  28053683 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaat 28053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 28064108 - 28064203
Alignment:
Q  307 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  28064108 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaat 28064203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 17746269 - 17746167
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  17746269 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 17746170  T
Q  354 tga 356  Q
    |||    
T  17746169 tga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 19047589 - 19047487
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  19047589 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 19047490  T
Q  354 tga 356  Q
    |||    
T  19047489 tga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 402
Target Start/End: Complemental strand, 27461142 - 27460997
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||| ||||||||||||||||||||||||||| |   ||| |||||||||||||||   |||||||||||||||||||||||||||   ||    
T  27461142 atgtctttccaatgtccatatgtaaagagcttcctgagctagaggttctaatcataagagaagca---gagctagaggaaatatttgtaagtgaaaaaga 27461046  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||| ||| |||||||||||||||| ||| ||||| |||||| ||||    
T  27461045 tgatcagaaactggagattccaaatctaaaacttgtagtatttgtaaat 27460997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 27392332 - 27392230
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| | |||| |||    
T  27392332 atgtgtttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagctagaggaaatatttgtatgcgaagttga 27392233  T
Q  354 tga 356  Q
    |||    
T  27392232 tga 27392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 11418886 - 11419034
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||  |||||| |||||||| ||| |||||||||||||||||||||||||||||| |||    
T  11418886 atgtttttccaatctccctgtgtaaagagcttcctgagctatatgttctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatga 11418985  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    | |||| |||   |||||||| ||||| ||| || || |||||||||||    
T  11418986 tcatcagaaaagcgagattccgaatcttaaatttttagtatttgaaaat 11419034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 28035583 - 28035731
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||||||||||||||||||||  || || |   ||| || |||||||||||| || || | || |||||||||| ||||||||||||    
T  28035583 atgtctttccaatctccatatgtaaagagcttcccaagttagaagctctaatgataagagaagcagataagatggaagaaatatttgcaagtgaaggtga 28035682  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||| |||||||||||||||||||| ||| ||||| | |||||||||    
T  28035683 tgatcagaaagtggagattccaaatctaaaatttgtagtgtttgaaaat 28035731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 28147198 - 28147307
Alignment:
Q  8 tccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacat-gtgtttatttcccattcatttattgcaggaattgaggg 106  Q
    |||| ||| ||||||||||||||||||| ||| |  ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |    
T  28147198 tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtg 28147297  T
Q  107 ggaatgtgga 116  Q
    ||||||||||    
T  28147298 ggaatgtgga 28147307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 12146179 - 12146274
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 349  Q
    |||| |||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||| ||||||||||||||||||||||| ||||||    
T  12146179 atgtgtttccaatctccatatgtaaagagcttcctgagctacagtttctaattataagagaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 17746774 - 17746683
Alignment:
Q  24 atctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  17746774 atctctattgtacttacag-actttgttattcttattttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 17746683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 19048094 - 19048003
Alignment:
Q  24 atctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    |||||||||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  19048094 atctctattgtacttacag-actttgttattcttattttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 19048003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28482461 - 28482365
Alignment:
Q  1 aaatatctccatagcttttt-atcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaa 99  Q
    |||||||||||||| ||||| ||||||||||||||| ||| || ||    || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  28482461 aaatatctccatagtttttttatcatctctattgtacttataggac----ttgttcttattttatacatgtgtttatttcccattcatttattgtaggaa 28482366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28511273 - 28511177
Alignment:
Q  1 aaatatctccatagcttttt-atcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaa 99  Q
    |||||||||||||| ||||| ||||||||||||||| ||| || ||    || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  28511273 aaatatctccatagtttttttatcatctctattgtacttataggac----ttgttcttattttatacatgtgtttatttcccattcatttattgtaggaa 28511178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 254 - 354
Target Start/End: Complemental strand, 18026566 - 18026466
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||||||||||||| |||||||||||||||||||||   | | ||||||  ||||||| |  |||||||||||||||||||| |||||| |||    
T  18026566 atgtctttccaatctccatatataaagagcttcctgagctaaaggttataatcatagtagaagcagagaagctagaggaaatatttgtatgtgaagttga 18026467  T
Q  354 t 354  Q
    |    
T  18026466 t 18026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 356
Target Start/End: Original strand, 27347569 - 27347671
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||||||||||||||||||||||| |   ||| |||||||||||| || | ||  | ||||||||||||||| || |||||||    
T  27347569 atgtgtttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcagaagaattggaggaaatatttgtatgtaaaggtga 27347668  T
Q  354 tga 356  Q
    |||    
T  27347669 tga 27347671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 28081414 - 28081487
Alignment:
Q  45 ctttgttattcttattttatacat--gtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    ||||| |||||||||||| | |||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  28081414 ctttgatattcttattttgtgcatatgtgtttatttcccattcatttattgcaggaattgagtgggaatgtgga 28081487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 26115082 - 26114998
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 338  Q
    ||||||||||| ||||||| |||||||||||||||||||||||   | |||| |||||||||||| ||||| |||| ||||||||    
T  26115082 atgtctttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgagttagaagaaatatt 26114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 26142394 - 26142310
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 338  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||   | || | |||||||||||| |||||||||||||||||||    
T  26142394 atgtctttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagctagaggaaatatt 26142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 26210190 - 26210106
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 338  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||  | |||| |||||||||||| ||||| |||||||||||||    
T  26210190 atgtgtttccagtctccatttgtaaagagtttcctgagctaaatgttatgataataagagaagcaaatgagttagaggaaatatt 26210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 27376362 - 27376457
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 349  Q
    ||||||||||||||||||||||| ||||||||||||||||| |   |||  | |||| |||| || || |||||||||||||||||||| ||||||    
T  27376362 atgtctttccaatctccatatgtgaagagcttcctgagctagagagtctagtgataaaagaatcagataagctagaggaaatatttgtatgtgaag 27376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 28081765 - 28081826
Alignment:
Q  165 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  28081765 gaagaatgcaaagagttaaagcatattattga---agatgatttggagaataaaaaatcctcaaa 28081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 27918358 - 27918454
Alignment:
Q  129 ttaagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaa 228  Q
    ||||||||||| || || || ||| | || ||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||||||||||    
T  27918358 ttaagatgtctgccgcagttgcttcatataagaattgaagaatgcaaagagttgaagtatattattga---agatgatttggagaataaaaaatcctcaa 27918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 27974226 - 27974291
Alignment:
Q  51 tattcttattttatacatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    |||||||||||||| |||||||||||||| ||||| |||| || |||||||||| |||||||||||    
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtgga 27974291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 26180699 - 26180615
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 338  Q
    |||| |||||| ||||||| ||||||||| |||||||||||||   | || | |||||||||||| |||||||||||||||||||    
T  26180699 atgtgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagctagaggaaatatt 26180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 27918045 - 27918113
Alignment:
Q  45 ctttgttattcttattttatacatgtgtttatttcccattcatttattgcaggaattgagggggaatgt 113  Q
    |||||||||| |||||||||  ||||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  27918045 ctttgttattgttattttattaatgtgtttatttcccattcgtttattacaggatttgagtgggaatgt 27918113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 26237429 - 26237350
Alignment:
Q  259 tttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 338  Q
    |||||| ||||||| ||||||||| |||||||||||||   | || |||||||||||||| ||||| |||||||||||||    
T  26237429 tttccagtctccatttgtaaagagtttcctgagctaaaggttatgttcataagagaagcaaatgagttagaggaaatatt 26237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 18026708 - 18026641
Alignment:
Q  159 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    ||||| ||||| ||||||||||| ||| |||||||||||   |||||||||||| ||||||||||||||||    
T  18026708 agaattgaagattgcaaagagttgaagcatattattgaa---gatgatttggagaataaaaaatcctcaaa 18026641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 26131662 - 26131578
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 338  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||||   | |||| ||||| |||||| |||||||||||| ||||||    
T  26131662 atgtctttccagtctccatttgtaaagagtttcctaagctaaaggttatgatgataagtgaagcaaatgagctagagggaatatt 26131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 28147744 - 28147814
Alignment:
Q  156 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    |||||||| ||||||||||| ||||| | | |||||||||||   |||||||||||| ||||||||||||||||    
T  28147744 atgagaattgaagaatgcaatgagttgaggcatattattgaa---gatgatttggagaataaaaaatcctcaaa 28147814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 28131961 - 28132030
Alignment:
Q  157 tgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    ||||||| |||||||||||||| || ||| |||| ||||||   |||||||||||| ||||||||||||||||    
T  28131961 tgagaattgaagaatgcaaagaattgaagcatataattgaa---gatgatttggagaataaaaaatcctcaaa 28132030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 28481959 - 28481909
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctga 304  Q
    |||| ||||||||||||||||||||||| |||||||||||| || ||||||    
T  28481959 atgtgtttccaatctccatatgtaaagaccttcctgagctatatgatctga 28481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 17746414 - 17746344
Alignment:
Q  156 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  17746414 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 17746344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 19047734 - 19047664
Alignment:
Q  156 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  19047734 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 19047664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 26180823 - 26180769
Alignment:
Q  165 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaat 222  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||||    
T  26180823 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaaat 26180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 27461284 - 27461214
Alignment:
Q  156 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||   ||||||||||| | ||||| ||||||||    
T  27461284 atgagaattgaagaatgcaaagagttgaagcatataattgaat---atgatttggagaacaaaaactcctcaaa 27461214  T

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Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 27975362 - 27975432
Alignment:
Q  156 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||   ||||||||||| ||| ||||||||||||    
T  27975362 atgagaattgaagagtgcaaagagttgaagcatataattgaat---atgatttggagaatagaaaatcctcaaa 27975432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 26210314 - 26210262
Alignment:
Q  165 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 220  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26210314 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 26237558 - 26237506
Alignment:
Q  165 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 220  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26237558 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26237506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 26627178 - 26627227
Alignment:
Q  54 tcttattttatacatgtgtttatttcccattcatttattgcaggaattga 103  Q
    ||||||||||| ||  | |||||||||||||| |||||||||||||||||    
T  26627178 tcttattttatgcacatatttatttcccattcttttattgcaggaattga 26627227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 28053208 - 28053249
Alignment:
Q  75 atttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtgga 28053249  T

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Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  75 atttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtgga 28063674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 11418747 - 11418814
Alignment:
Q  159 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 229  Q
    ||||| ||||||||||||||||| ||| |||| |||||   |||||| |||||| ||||||| ||||||||    
T  11418747 agaattgaagaatgcaaagagttgaagcatatgattga---agatgacttggagaataaaaattcctcaaa 11418814  T

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Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 18027021 - 18026977
Alignment:
Q  72 tttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  18027021 tttatttcccattcatttgtggcaggaatggagtgggaatgtgga 18026977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 27392763 - 27392719
Alignment:
Q  72 tttatttcccattcatttattgcaggaattgagggggaatgtgga 116  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  27392763 tttatttcccattcatttgtggcaggaatcgagcgggaatgtgga 27392719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 28053163 - 28053211
Alignment:
Q  13 agctttttatcatctctattgtaattacagcactttgttattcttattt 61  Q
    |||||||||| |||||||||||| |||||| || |||||||||| ||||    
T  28053163 agctttttattatctctattgtacttacaggacattgttattctcattt 28053211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 28063588 - 28063636
Alignment:
Q  13 agctttttatcatctctattgtaattacagcactttgttattcttattt 61  Q
    |||||||||| |||||||||||| |||||| || |||||||||| ||||    
T  28063588 agctttttattatctctattgtacttacaggacattgttattctcattt 28063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 17484 - 17632
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||  | |||||||||||| |||||||||||||||||| || ||||||||||||    
T  17484 atgtgtttccaatctccatatgtaaagagcttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtga 17583  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||||||    
T  17584 tgatcacaaaatggagattccaaatctaaaatttgtagtatttgaaaat 17632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16978 - 17073
Alignment:
Q  1 aaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16978 aaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacatgtgtttatttcccattcatttattgcag 17073  T

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Target: scaffold0043 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 249 - 390
Target Start/End: Complemental strand, 54828 - 54687
Alignment:
Q  249 ggaacatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaa 348  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  54828 ggaaaatgtctttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagctagaggaaatatttgtatgtgaa 54729  T
Q  349 ggtgatgatcacaaagtggagattccaaatctgaaagttgta 390  Q
    |  | |||||| |||||  |  ||||||||||||||||||||    
T  54728 gaaggtgatcagaaagtcaatcttccaaatctgaaagttgta 54687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 54989 - 54907
Alignment:
Q  135 tgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 220  Q
    ||||||||||| || ||| | || ||||| ||||||||||||||||| ||| |||| |||||   ||||||||||||| |||||||    
T  54989 tgtctacctcagttgcttcatataagaattgaagaatgcaaagagttgaagcatatgattga---agatgatttggagaataaaaa 54907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 254 - 402
Target Start/End: Complemental strand, 8693432 - 8693284
Alignment:
Q  254 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 353  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||| || |||||||||| ||||||||||      
T  8693432 atgtctttccagtctccatatgtaacgagcttcctgagctaaatgttctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggtcg 8693333  T
Q  354 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 402  Q
    |||| | ||||| ||||||||||||||  ||  |||| |||||||||||    
T  8693332 tgatgagaaagtcgagattccaaatctagaatatgtagtatttgaaaat 8693284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 8693606 - 8693519
Alignment:
Q  130 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 220  Q
    |||| |||||||| || || ||| | |||||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||    
T  8693606 taaggtgtctaccacagttgctttatatgagaattgaagaatgcaaagagttgaagcatattattga---agatgatttggagaataaaaa 8693519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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