View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_24 (Length: 407)
Name: NF11426_low_24
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 3651195 - 3651580
Alignment:
| Q |
15 |
ggcagatgcattggttttgatcatatgaaaatgattaaattatttgtatgaagaagatattatttgcagcgatagaaacgaatataattagcttaaaatt |
114 |
Q |
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| T |
3651195 |
ggcagatgcattggttttgatcatatgaaaatgattaaattatttgtatgaagaagatattatttgcagcaat-gaaacgaatataattagcttaaaatt |
3651293 |
T |
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| Q |
115 |
attatgagaactcatttttaagtgttttaaacttaaaagaatgaattcaattacaaaattggcttattaaaaattactcctgaattcaatcattgaaatg |
214 |
Q |
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| T |
3651294 |
attatgagaactcatttttaagtgttttaaacttaaaagaatgaattcaattacaaaattggcttattaaaaattactcctgaattcaatcattgaaatg |
3651393 |
T |
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| Q |
215 |
gctgttgataattctcaatatgttggattttctaaattgcggc------------cttttc---aaactctaaaattaagtcagcatattattgaaggat |
299 |
Q |
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| T |
3651394 |
gctgttgataattctcaatatgttggattttctaaattgcggcgtaaccgtaactctttacactaaactctaaaattaagtcagcatattattgaaggat |
3651493 |
T |
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| Q |
300 |
aagcaaattaaaggagtttagtggacatttataatcaagttagtgtaaaagatacacattaatggatccatgccatttgatgcagtgtttat |
391 |
Q |
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| T |
3651494 |
aggc-----aaaggagtttagtggacatttataatcaagttagtgtaaaagatacacattaatggatccatgccatttgatgcagtgtttat |
3651580 |
T |
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