View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_25 (Length: 404)
Name: NF11426_low_25
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 386
Target Start/End: Complemental strand, 19320000 - 19319620
Alignment:
| Q |
6 |
aggagcacagatgaagaacgaacaaagtaaattctgtctggagtatacctccaagaccaagaacccc-tttcagataacctaaacccctccaaactagca |
104 |
Q |
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| T |
19320000 |
aggaccacacatgaagaacgaacaaagtaaattctgtctggagtatacctccaagaccaagaaccccctttcagataacctaaacccctccaaactagca |
19319901 |
T |
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| Q |
105 |
aaaagttcatgtgccaaatccagctcccaagcaaacaagggtctacgccattgcaggttccactccaaaacacatcccctcgaaacacgttattcattcc |
204 |
Q |
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| T |
19319900 |
aaaagttcatgtgccaaatccagctcccacgcaaacaagggtctacgccattgcaggttccactccaaaacacatcccctagaaacacgttattcattcc |
19319801 |
T |
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| Q |
205 |
ttagtttgctagaacttaacaaaaatatctatagcaaacccgtacatgtcttgcctagtaggatatataataacatctaaaacatgcatgtgtacaagtt |
304 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19319800 |
ttagtttgctagaacttaacaaaaatatatatagcaaacccgtacatgtcttgcctagtaggatatataataacatctaaaacatgcatgtgtacaagtt |
19319701 |
T |
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| Q |
305 |
tcaggaccaaaatcatttattcaatcaccttacaaatacataatcataaaaagattatgtatgttacccatgaaagtcattt |
386 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19319700 |
tcaggaccaaaatcatttattcaatca-cttacaaatacataatcataaaaagattatgtatgttacccatgaaagtcattt |
19319620 |
T |
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