View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_28 (Length: 355)
Name: NF11426_low_28
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 97041 - 97381
Alignment:
| Q |
1 |
gatgtttgacttatgtgattcaaactagtgcgggataaagtagagcggatacgcacaacataatatatgttctaatcattaactatccaatctcaacttg |
100 |
Q |
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| T |
97041 |
gatgtttgacttatgtgattcaaactagtgtgggataaagtagagcggatacgcacaacataatatatgttctaatcattaactatccaatctcaacttg |
97140 |
T |
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| Q |
101 |
aaatgtagcaagtcaaagtgtctggttccaatctcgactactagtaacgaagattaacaacaaagaagaaacttatggtgaacaacaaattcacaatcaa |
200 |
Q |
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| T |
97141 |
aaatgtagcaagtcaaggtgtctggttgcaatctcgactactagtaatgaagattaacaacaaagaagaaacttatggtgaacaacaaattcacaatcaa |
97240 |
T |
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| Q |
201 |
ccttgataaaaatttcaaagctcatgggaaaaataaacacatagaaacaaactttcattttcatagagatcaagtgaatatgggcaattaggttactcta |
300 |
Q |
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| T |
97241 |
ccttgataaaaatttcaaagctcatgggaaaaataaacacatagaaacaaactttcattttcatagagatcaagtgaatatgggcaattaggttactcta |
97340 |
T |
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| Q |
301 |
acttactacaagtcggatgattaggatgcaattgtcctaac |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
97341 |
acttactacaagtcggatgattaggatgcaattgtcctaac |
97381 |
T |
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