View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_3 (Length: 703)
Name: NF11426_low_3
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 12 - 697
Target Start/End: Original strand, 52419568 - 52420250
Alignment:
| Q |
12 |
catcaaatccgacccgaccgtgatagcttccaaccctgttctttcctcaacgacggaaaccaccatgcccaaacccatgacccccatcaaataaacctcg |
111 |
Q |
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| T |
52419568 |
catcaaatccgacccgaccgtgatagcttccaaccctgttctttcctcaacgacggaaaccaccatgcccaaacccatgacccccatcaaataaacctcg |
52419667 |
T |
|
| Q |
112 |
aaaccaaacccgatcgccataataatgaatcgcaattcaggagatgtgaaagccgaagagatgacacgtggcacggatgagaatacaaaaagtatgacgt |
211 |
Q |
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| T |
52419668 |
aaaccaaacccgatcgccataataatgaatcgcaattcaggtgatgtgaaagccgaagagatgacacgtggcacggatgagaatacgaaaagtatgacgt |
52419767 |
T |
|
| Q |
212 |
aaacaaaaatagcggtgacgaacgggcgtttccaattctctttaacggcggtaacaacggagttaacagtaaccgatttaccttgaatgaagttgtatgt |
311 |
Q |
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| T |
52419768 |
aaacaaaaatagcggtgacgaacgggcgtttccaattctctttaacggcggtaacaacggagttaacagtaaccgatttaccttgaatgaagttgtatgt |
52419867 |
T |
|
| Q |
312 |
ggtgtggacggatgaaacggcggcggcgagggagagagggaggcaaatgagtaagaagagtgctctgatgcggaggagataaaccgcgttgtcacgtgat |
411 |
Q |
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| T |
52419868 |
ggtgtggacggatgaaacggcggcggcgagggagagagggaggcaaatgagtaagaagagtgctctgatgcggaggagataaacagcgttgtcacgtgat |
52419967 |
T |
|
| Q |
412 |
tcgtgccagacgtgacgcgcttccatgagagtggaggtgaaaagagcgagggcttcgaggtgatagatatgggaacgaagggtgtgtgtggtgatggaga |
511 |
Q |
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| T |
52419968 |
tcgtgccagacgtgacgcgcttccatgagagtggaggtgaaaagagcgagggcttcgaggtgatagatatgggaacgaagggtgtgtgtggtgatggaga |
52420067 |
T |
|
| Q |
512 |
gtgtgaacaagagaaatgagagtggaagtgttgtgaataatgcgatgaacaatagtacgagcttgttgttgtgaataactctaactggttctaacactct |
611 |
Q |
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| T |
52420068 |
gtgtgaacaagagaaatgagagtggaagtgttgtgaataatgcgatgaacaataatacgagcttgttgttgtgaataactctcactggttctaacactct |
52420167 |
T |
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| Q |
612 |
ccaaaaaccatcttttccttttctcaacattttcgttgttgttaacttaacaatcaatgcatcatcaattataagatctctgcttc |
697 |
Q |
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| T |
52420168 |
ccaaaaaccatcttttccttttctcaacattttc---gttgttaacttaacaatcaatgcatcatcaattataatatctatgcttc |
52420250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 430 - 627
Target Start/End: Original strand, 55775055 - 55775250
Alignment:
| Q |
430 |
gcttccatgagagtggaggtgaaaagagcgagggcttcgaggtgatagatatgggaacgaagggtgtgtgtggtgatggagagtgtgaacaagagaaatg |
529 |
Q |
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| T |
55775055 |
gcttccatgagagtggaggtgaaacaagtgagggcttcaaggtggtagatatgggaagagagggtgtgtgtggtgat---gagagtgatgaagagaaatg |
55775151 |
T |
|
| Q |
530 |
agagtggaagtgttgtgaataatgcgatgaacaatagtacgagcttgttgttgtgaataactctaactggttctaacactctcc-aaaaaccatctttt |
627 |
Q |
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| T |
55775152 |
agagtggaagtgttgtgaatgatgtaatacataagattacgaacttgttgttttgaattactttcaccggttctaccaatgtccaaaaaaccatctttt |
55775250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 430 - 627
Target Start/End: Original strand, 55839233 - 55839428
Alignment:
| Q |
430 |
gcttccatgagagtggaggtgaaaagagcgagggcttcgaggtgatagatatgggaacgaagggtgtgtgtggtgatggagagtgtgaacaagagaaatg |
529 |
Q |
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|||||||||||||||||||||||| || ||||||||| ||||| |||||||||||| ||||||||||||||||| ||| |||| |||||||||| |
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| T |
55839233 |
gcttccatgagagtggaggtgaaacaagtgagggcttcaaggtggtagatatgggaagagagggtgtgtgtggtgat---gagagtgatgaagagaaatg |
55839329 |
T |
|
| Q |
530 |
agagtggaagtgttgtgaataatgcgatgaacaatagtacgagcttgttgttgtgaataactctaactggttctaacactctcc-aaaaaccatctttt |
627 |
Q |
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|||||||||||||||||||| ||| || | || | ||||| ||||||||| ||||| ||| | || ||||||| || | ||| |||||||||||||| |
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| T |
55839330 |
agagtggaagtgttgtgaatgatgtaatacataagattacgaacttgttgttttgaattactttcaccggttctaccaatgtccaaaaaaccatctttt |
55839428 |
T |
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