View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_31 (Length: 345)
Name: NF11426_low_31
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 48331982 - 48331749
Alignment:
| Q |
15 |
attcaaaatagtgtttaccgta-tctctacaatcatgagaatatttttgttgctgatcatggtggtggtgctggtaacaattgggctagtggctaccatc |
113 |
Q |
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| T |
48331982 |
attcaaaatagtgattaccgtaatctctacaatcatgagaatatttttgttgctgatcatggtggtggtgctggtaacaattgggctagtggctaccatc |
48331883 |
T |
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| Q |
114 |
aggtatgcttactttaatccatgtctgtcagtgatgctccatttctttgttatttctagttttctacattcatagagataatgtttaaatgcttgtgtgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48331882 |
aggtatgcttactttaatccatgtctgtcagtgatgctccatttctttgttatttctagttttctacattcatagagataatgtttaaatgcttgtgtgc |
48331783 |
T |
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| Q |
214 |
ttcattgcttgcaaagacacttatgatagttgtc |
247 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48331782 |
ttcattgcttgcaaagacacttatgatagttgtc |
48331749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 48331678 - 48331581
Alignment:
| Q |
248 |
aatggatagataggacccaagttagtcacaattcctgaaaatatgtgtaagggcgaggtgtataagagaaggaatagagatcagagagggtgtggatt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48331678 |
aatggatagataggacccaagttagtcacaattcctgaaaatatgtgtaagggcgaggtgtataagagaaggaatagagatcagagagggtgtggatt |
48331581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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