View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_33 (Length: 314)
Name: NF11426_low_33
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_33 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 244 - 546
Alignment:
| Q |
1 |
agggagccaaagtccattggttctcgatcctcaattcgttgatggtgatcactttccttgctggtattgttcttgttatcttcttgagaactgttaggag |
100 |
Q |
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| T |
244 |
agggagccaaagtccattggttctcgatcctcaattcgttgatggtgatcactttccttgctggtattgttcttgttatcttcttgagaactgttaggag |
343 |
T |
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| Q |
101 |
ggatctggccagttacgaggagcttgataaggaagctcaagcacagatgaatgaggagttatctggttggaagcttgtggtgggggatgttttccgtgcc |
200 |
Q |
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| T |
344 |
ggatctggccagttacgaggagcttgataaggaagctcaagcacagatgaatgaggagttatctggttggaagcttgtggtgggggatgttttccgtgcc |
443 |
T |
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| Q |
201 |
ccatcaaatccttctttgttgtgtataatggttggtgatggagttcagattcttgggatggctgtcgtgacaatattgtttgctgcacttggattcatct |
300 |
Q |
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| T |
444 |
ccatcaaatccttctttgttgtgtataatggttggtgatggagttcagattcttgggatggctgtcgtgacaatattgtttgctgcacttggattcatgt |
543 |
T |
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| Q |
301 |
cac |
303 |
Q |
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||| |
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| T |
544 |
cac |
546 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 43219586 - 43219411
Alignment:
| Q |
15 |
cattggttctcgatcctcaattcgttgatggtgatcactttccttgctggtattgttcttgttatcttcttgagaactgttaggagggatctggccagtt |
114 |
Q |
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| T |
43219586 |
cattggttctcgattctaaattcactgatggtgatcttttttctagctggtattgtttttgtcattttcttaagaacagtgagaagggacttggcaaggt |
43219487 |
T |
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| Q |
115 |
acgaggagcttgataaggaagctcaagcacagatgaatgaggagttatctggttggaagcttgtggtgggggatgt |
190 |
Q |
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| T |
43219486 |
atgaggaattggacaaagagacacaagctcagatgaatgaggagctttctggatggaagcttgttgtgggtgatgt |
43219411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 37071184 - 37071347
Alignment:
| Q |
15 |
cattggttctcgatcctcaattcgttgatggtgatcactttccttgctggtattgttcttgttatcttcttgagaactgttaggagggatctggccagtt |
114 |
Q |
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| T |
37071184 |
cattggttctcaatcctaaattcactgatggttattattttccttgctggcattgtttttgtcattttcttaagaactgtaagaagggatttgacaaggt |
37071283 |
T |
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| Q |
115 |
acgaggagcttgataaggaagctcaagcacagatgaatgaggagttatctggttggaagcttgt |
178 |
Q |
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| T |
37071284 |
atgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaaacttgt |
37071347 |
T |
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