View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_low_34 (Length: 303)

Name: NF11426_low_34
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_low_34
NF11426_low_34
[»] chr1 (24 HSPs)
chr1 (22-288)||(2073812-2074083)
chr1 (22-288)||(2069466-2069737)
chr1 (214-273)||(17745265-17745325)
chr1 (206-272)||(40257398-40257465)
chr1 (206-272)||(51814493-51814560)
chr1 (206-263)||(8177201-8177259)
chr1 (207-272)||(19528337-19528403)
chr1 (206-270)||(25297771-25297836)
chr1 (208-272)||(44126396-44126461)
chr1 (206-272)||(8904413-8904480)
chr1 (206-272)||(41508830-41508897)
chr1 (207-272)||(9117119-9117185)
chr1 (207-272)||(9165205-9165271)
chr1 (207-245)||(11068881-11068919)
chr1 (207-260)||(19480527-19480581)
chr1 (207-272)||(47753714-47753780)
chr1 (207-272)||(52116791-52116857)
chr1 (224-272)||(12587287-12587336)
chr1 (207-248)||(16170013-16170054)
chr1 (220-288)||(28411343-28411412)
chr1 (207-240)||(38978985-38979018)
chr1 (207-248)||(42983409-42983450)
chr1 (207-263)||(51703779-51703836)
chr1 (209-272)||(33700783-33700847)
[»] chr5 (13 HSPs)
chr5 (207-272)||(14495815-14495881)
chr5 (205-272)||(29692396-29692464)
chr5 (214-272)||(1410669-1410728)
chr5 (207-272)||(16773807-16773873)
chr5 (214-273)||(16436625-16436684)
chr5 (207-273)||(16457810-16457877)
chr5 (214-265)||(19949633-19949684)
chr5 (207-265)||(29075781-29075840)
chr5 (207-272)||(21589288-21589354)
chr5 (207-272)||(5390862-5390926)
chr5 (207-243)||(892514-892550)
chr5 (207-270)||(6844729-6844793)
chr5 (207-262)||(21549157-21549213)
[»] chr6 (14 HSPs)
chr6 (207-265)||(24641207-24641266)
chr6 (214-272)||(6776617-6776676)
chr6 (206-272)||(33549103-33549170)
chr6 (205-263)||(12188322-12188381)
chr6 (206-272)||(12234517-12234584)
chr6 (206-272)||(31623001-31623068)
chr6 (209-248)||(32613175-32613214)
chr6 (227-273)||(346551-346597)
chr6 (207-272)||(21418470-21418536)
chr6 (207-272)||(30127400-30127466)
chr6 (214-243)||(34444810-34444839)
chr6 (207-243)||(28028530-28028566)
chr6 (207-262)||(32201905-32201961)
chr6 (214-246)||(33931982-33932014)
[»] chr3 (21 HSPs)
chr3 (211-272)||(4844521-4844583)
chr3 (211-272)||(4870217-4870279)
chr3 (211-272)||(2667866-2667928)
chr3 (206-262)||(5499427-5499484)
chr3 (207-272)||(14186648-14186713)
chr3 (207-248)||(16991542-16991583)
chr3 (206-270)||(31520617-31520682)
chr3 (206-272)||(8051213-8051280)
chr3 (206-248)||(10499144-10499186)
chr3 (206-265)||(36720380-36720440)
chr3 (214-272)||(13808895-13808954)
chr3 (207-265)||(31788987-31789046)
chr3 (207-245)||(203090-203128)
chr3 (206-263)||(7975417-7975475)
chr3 (207-272)||(14339610-14339676)
chr3 (207-272)||(21960551-21960617)
chr3 (207-260)||(42430335-42430388)
chr3 (206-263)||(46518627-46518685)
chr3 (207-263)||(4222141-4222198)
chr3 (215-262)||(11612307-11612355)
chr3 (211-243)||(17554454-17554486)
[»] chr7 (19 HSPs)
chr7 (205-248)||(35119381-35119424)
chr7 (206-272)||(45709718-45709785)
chr7 (207-272)||(15137553-15137619)
chr7 (207-272)||(22760863-22760929)
chr7 (207-272)||(23301612-23301678)
chr7 (207-272)||(48771938-48772004)
chr7 (207-274)||(25021343-25021411)
chr7 (207-246)||(4161288-4161327)
chr7 (206-272)||(23552117-23552184)
chr7 (214-272)||(41519274-41519333)
chr7 (207-260)||(7801180-7801234)
chr7 (214-263)||(23595736-23595786)
chr7 (207-260)||(25956314-25956368)
chr7 (207-272)||(26459420-26459486)
chr7 (206-263)||(26526289-26526347)
chr7 (207-272)||(43590907-43590973)
chr7 (207-271)||(25590611-25590676)
chr7 (206-243)||(41487361-41487398)
chr7 (209-272)||(21854550-21854614)
[»] chr2 (13 HSPs)
chr2 (206-272)||(39714991-39715058)
chr2 (205-272)||(37480073-37480141)
chr2 (206-272)||(34041598-34041665)
chr2 (204-273)||(29197385-29197455)
chr2 (207-272)||(42327405-42327471)
chr2 (214-262)||(3001386-3001435)
chr2 (207-263)||(4438998-4439055)
chr2 (206-235)||(25931005-25931034)
chr2 (206-265)||(7799052-7799112)
chr2 (208-263)||(16918597-16918653)
chr2 (207-262)||(18259730-18259786)
chr2 (207-243)||(32106566-32106602)
chr2 (207-270)||(41202250-41202314)
[»] chr4 (13 HSPs)
chr4 (207-272)||(47044717-47044783)
chr4 (207-270)||(9241037-9241101)
chr4 (206-248)||(51250557-51250599)
chr4 (207-272)||(51948480-51948546)
chr4 (207-272)||(19229218-19229283)
chr4 (207-271)||(19238588-19238653)
chr4 (207-262)||(28635696-28635752)
chr4 (214-272)||(21660154-21660213)
chr4 (214-272)||(21668918-21668977)
chr4 (205-248)||(27965545-27965588)
chr4 (207-272)||(37109361-37109427)
chr4 (207-272)||(55427210-55427276)
chr4 (207-243)||(13496241-13496277)
[»] chr8 (14 HSPs)
chr8 (207-263)||(32157191-32157248)
chr8 (206-272)||(16852339-16852406)
chr8 (207-272)||(968362-968428)
chr8 (207-272)||(23361659-23361725)
chr8 (206-272)||(4830486-4830553)
chr8 (206-272)||(5801046-5801113)
chr8 (206-272)||(19703497-19703564)
chr8 (207-261)||(20994479-20994534)
chr8 (207-272)||(26688865-26688931)
chr8 (208-272)||(29858059-29858124)
chr8 (209-272)||(2203494-2203558)
chr8 (206-273)||(8484998-8485066)
chr8 (203-243)||(22268973-22269013)
chr8 (206-273)||(28783059-28783127)
[»] scaffold0299 (1 HSPs)
scaffold0299 (214-272)||(11535-11594)
[»] scaffold0258 (1 HSPs)
scaffold0258 (207-272)||(15333-15399)
[»] scaffold0187 (2 HSPs)
scaffold0187 (207-240)||(12465-12498)
scaffold0187 (207-240)||(22793-22826)
[»] scaffold1367 (1 HSPs)
scaffold1367 (214-272)||(850-909)
[»] scaffold0118 (1 HSPs)
scaffold0118 (207-272)||(41643-41709)
[»] scaffold0070 (1 HSPs)
scaffold0070 (207-248)||(42555-42596)
[»] scaffold0417 (1 HSPs)
scaffold0417 (204-248)||(10216-10260)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 2073812 - 2074083
Alignment:
Q  22 ttctccacacaattatcattggaaggagattcatgtgcgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacatcattacgaatt- 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  2073812 ttctccacacaattatcattggaaggagattcatgtacgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacataattacgaattc 2073911  T
Q  121 ----atctgtcacattgtgcaaaaccatatagaaagaagtgtcaaccttatctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttg 216  Q
        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2073912 ttttatctgtcacattgtgcaaaaccatacagaaagaagtgtcaaccttatctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttg 2074011  T
Q  217 ggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcgacgtctcatactcaaatctctctg 288  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||    
T  2074012 ggttggcctggttgtattgacttgggatctagcgtgtgctcctcctcgaagtctcatattcaaatccctctg 2074083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 2069466 - 2069737
Alignment:
Q  22 ttctccacacaattatcattggaaggagattcatgtgcgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacatcattacgaatt- 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  2069466 ttctccacacaattatcattggaaggagattcatgtacgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacataattacgaattc 2069565  T
Q  121 ----atctgtcacattgtgcaaaaccatatagaaagaagtgtcaaccttatctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttg 216  Q
        ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  2069566 ttttatctgtcacattgtgcaaaaccatacagaaagaagtgtcaaccttatctgtaattgcaaatgtgtctttaacactttcaaccaccacacccatttg 2069665  T
Q  217 ggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcgacgtctcatactcaaatctctctg 288  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  2069666 ggttggcctggttgtattgacttgggatctggcatgtgctcctcctcgaagtctcatattcaaatccctctg 2069737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 17745325 - 17745265
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctcat 273  Q
    |||||||||||| ||||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  17745325 ttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcat 17745265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 40257398 - 40257465
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||||||||||||| |||| || || || |||||||||||||||| ||||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctca 40257465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 51814493 - 51814560
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| ||||||||||||| ||||||||||||| |||||| | |||||||||||||| | ||||||    
T  51814493 aaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctca 51814560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 8177259 - 8177201
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    ||||||||||| |||||||| ||||||||| |||||||||| || ||||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctc 8177201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 19528403 - 19528337
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||| ||||||||||  | |||||||||||||| | ||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctca 19528337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 25297771 - 25297836
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtct 270  Q
    ||||||| ||||||||| || ||||||||||||| ||||||| | |||||||||||||||| ||||    
T  25297771 aaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtct 25297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 44126396 - 44126461
Alignment:
Q  208 acccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||| |||||||||||||||||||||||| ||||| || || |||||||||||| ||| ||||||    
T  44126396 acccacttgggttggcctggtggtattgacctgggacctgggagtgtgctcctccacgaggtctca 44126461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 8904413 - 8904480
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||| || ||||||||||||||| || | |||||||||||||| | ||||||    
T  8904413 aaacccacttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctca 8904480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 41508830 - 41508897
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| ||||||||||||||||||| ||  ||||||||| || |||||||||||||| | ||||||    
T  41508830 aaacccacttgggttggcctggtggtactggtttgggatctgggagtgtgctcctcctcaaggtctca 41508897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 9117119 - 9117185
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctgg-cgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||||||||| | |||||| | ||||||||||||  ||||||||||||| || ||||||    
T  9117119 aacccatttgggttggccggttggtatgggcttgggatctggaagtgtgctcctccttgaggtctca 9117185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 9165271 - 9165205
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||| | ||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctca 9165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 11068919 - 11068881
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc 245  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  11068919 aacccatttgggttgatctggtggtattgacttgggatc 11068881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 19480527 - 19480581
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctc 260  Q
    |||||||||||||||||||  |||| ||||||||||||| ||| |||||||||||    
T  19480527 aacccatttgggttggccttatggtgttgacttgggatcttggagtgtgctcctc 19480581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 47753714 - 47753780
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||  ||||||||||||| | ||||||    
T  47753714 aacccatttaggttgacctggtcgtattgacttgggatctaggactgtgctcctcctcaaggtctca 47753780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 52116857 - 52116791
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||| ||||||| |  || |||||||||||||| | ||||||    
T  52116857 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctca 52116791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 12587287 - 12587336
Alignment:
Q  224 ctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||||||||||||||||| | |||||||||||||||| ||||||    
T  12587287 ctggtgatattgacttgggatctgtgagtgtgctcctcctcgaggtctca 12587336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 16170054 - 16170013
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    |||||| ||||||| |||||||||||||||||||||| ||||    
T  16170054 aacccacttgggttagcctggtggtattgacttgggacctgg 16170013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 28411343 - 28411412
Alignment:
Q  220 tggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctcatactcaaatctctctg 288  Q
    ||||||||||||||||||||||||| || | ||||||||||| | || |||||| | |||| ||||||||    
T  28411343 tggcctggtggtattgacttgggatatgagagtgtgctcctctttgaggtctcagattcaattctctctg 28411412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 38979018 - 38978985
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttg 240  Q
    ||||||||||||||||||| ||||||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttg 38978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 42983450 - 42983409
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  42983450 aacctatttgggttggcatggtggtattgacttgagatctgg 42983409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 51703779 - 51703836
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    |||||||||||||||| || ||||||||| ||||| |||| || ||||||||||||||    
T  51703779 aacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctc 51703836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 33700847 - 33700783
Alignment:
Q  209 cccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||| |||||||||||| ||||||||| ||||| |||| || |||||||||||||| | ||||||    
T  33700847 cccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctca 33700783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 14495881 - 14495815
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 14495815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 29692464 - 29692396
Alignment:
Q  205 caaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||||||||| ||||||||||||  ||||||||| || |||||||||||||| | ||||||    
T  29692464 caaacccatttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctcaaagtctca 29692396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 1410728 - 1410669
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||| ||||||||||||||||||||| | || |||||||||||||||| ||||||    
T  1410728 ttgggttggtctggtggtattgacttgggatatgggagtgtgctcctcctcgaggtctca 1410669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 16773807 - 16773873
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||| ||||| |||||||||||||||||||| || || |||||||||||||||| ||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctca 16773873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 16436625 - 16436684
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcgacgtctcat 273  Q
    |||||||||||| ||||||||| |||||||  ||| |||||||||||||| | |||||||    
T  16436625 ttgggttggcctagtggtattggcttgggacttggagtgtgctcctcctcaaggtctcat 16436684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 16457810 - 16457877
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctcgacgtctcat 273  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||| | |||||||    
T  16457810 aacccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcat 16457877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 19949684 - 19949633
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcga 265  Q
    |||||||| | |||||||||||||||| ||||| | ||||||||||||||||    
T  19949684 ttgggttgacttggtggtattgacttgagatctagagtgtgctcctcctcga 19949633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 29075781 - 29075840
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 265  Q
    |||||| ||||||| |||| ||||||||| |||||||||| || ||||||||||||||||    
T  29075781 aacccacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcga 29075840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 21589288 - 21589354
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||| ||||||| || || || |||| |||||||| ||||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctca 21589354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 5390926 - 5390862
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||||||||||||| ||||||||| ||||||  || | | |||||||||||||| ||||||    
T  5390926 aacccatttgggttggcctagtggtattggcttggg-gcttgggagtgctcctcctcgaggtctca 5390862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 892550 - 892514
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga 243  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  892550 aacccatttgggttggcctagtggtattggcttggga 892514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 6844729 - 6844793
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtct 270  Q
    |||||| ||||||||||| |||||||||||||||| || | || ||||| |||||||||| ||||    
T  6844729 aacccacttgggttggccaggtggtattgacttggaatttgggagtgtgttcctcctcgaggtct 6844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 21549213 - 21549157
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 262  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcct 21549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 24641266 - 24641207
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 265  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  24641266 aacccatttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctcga 24641207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 6776676 - 6776617
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||    
T  6776676 ttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctcgatgtctca 6776617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 33549103 - 33549170
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| ||||||||| |||||||||||| ||||||| || || |||||||||||||||| ||||||    
T  33549103 aaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 33549170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 12188381 - 12188322
Alignment:
Q  205 caaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    |||||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  12188381 caaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 12188322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 12234584 - 12234517
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| || ||||||||||||||||||||||||||| || || |||||||||  ||||| ||||||    
T  12234584 aaacccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctca 12234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 31623068 - 31623001
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctcgacgtctca 272  Q
    ||||||| ||||||||| | |||||||||| ||||||| ||||  |||||||||||||||| ||||||    
T  31623068 aaacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 31623001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 32613214 - 32613175
Alignment:
Q  209 cccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgg 32613175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 346551 - 346597
Alignment:
Q  227 gtggtattgacttgggatctggcgtgtgctcctcctcgacgtctcat 273  Q
    ||||||||||||||||| |||| ||||||| |||||||| |||||||    
T  346551 gtggtattgacttgggacctggagtgtgcttctcctcgaggtctcat 346597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 21418470 - 21418536
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||| ||||||| |  || |||||||||||||| | ||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctccatgtctca 21418536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 30127400 - 30127466
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||||||||| |||||||||||| |||||| ||| || ||||||||||| |||| ||||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctca 30127466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 34444810 - 34444839
Alignment:
Q  214 ttgggttggcctggtggtattgacttggga 243  Q
    ||||||||||||||||||||||||||||||    
T  34444810 ttgggttggcctggtggtattgacttggga 34444839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 28028530 - 28028566
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga 243  Q
    |||||| |||||||||||||||||| |||||||||||    
T  28028530 aacccacttgggttggcctggtggtgttgacttggga 28028566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 32201961 - 32201905
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 262  Q
    ||||||||||||||| | ||||||||||| ||||||||||  | |||||||||||||    
T  32201961 aacccatttgggttgacttggtggtattggcttgggatctcagagtgtgctcctcct 32201905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 33932014 - 33931982
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct 246  Q
    |||||||| ||||||||||||||||||||||||    
T  33932014 ttgggttgacctggtggtattgacttgggatct 33931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 4844583 - 4844521
Alignment:
Q  211 catttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  4844583 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 4844521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 4870279 - 4870217
Alignment:
Q  211 catttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  4870279 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 4870217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 2667866 - 2667928
Alignment:
Q  211 catttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||| ||||||| ||||||    
T  2667866 catttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctca 2667928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 5499484 - 5499427
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcct 262  Q
    ||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  5499484 aaacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct 5499427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 14186648 - 14186713
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||| ||||||||| ||||||| |||| |||||||||||||| | ||||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacctggagtgtgctcctcctcaaggtctca 14186713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 16991542 - 16991583
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  16991542 aacccatttgggttggcctggtggtattggcttgggatctgg 16991583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 31520682 - 31520617
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtct 270  Q
    ||||||| ||||||||||||||||| |||| |||||||||| || |||||||||||||||| ||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtct 31520617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 8051213 - 8051280
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||| || |||| |||||||| ||||||    
T  8051213 aaacccacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcgaggtctca 8051280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 10499186 - 10499144
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  10499186 aaacccacttgggttggcctggtggtattggcttgggatctgg 10499144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 36720380 - 36720440
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 265  Q
    ||||||| ||||||||| |||||||||||| |||||||| | || ||||||||||||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcga 36720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 13808954 - 13808895
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctcgacgtctca 272  Q
    ||||||||| |||||  ||||||||||||||||||| |||||||||||||| | ||||||    
T  13808954 ttgggttggtctggtcttattgacttgggatctggcagtgtgctcctcctctaggtctca 13808895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 31789046 - 31788987
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 265  Q
    |||||| |||||||||||| ||| ||||| |||||||||| || ||||||||||||||||    
T  31789046 aacccacttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctcga 31788987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 203090 - 203128
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc 245  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  203090 aacccacttgggttggcctagtggtattgacttgggatc 203128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 7975417 - 7975475
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    |||||||||| ||||||||| ||||||| | |||||||||| || ||||||||||||||    
T  7975417 aaacccatttaggttggcctagtggtataggcttgggatctgggagtgtgctcctcctc 7975475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 14339610 - 14339676
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||| ||||||||||||||||| |||||||| | || |||||||||||||| | ||||||    
T  14339610 aacccagttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctca 14339676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 21960551 - 21960617
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||||||||  |||||||||||| ||||||| ||| | |||||||||||||||| ||||||    
T  21960551 aacccaattgggttgcgctggtggtattggcttgggacctgagagtgtgctcctcctcgaggtctca 21960617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 42430335 - 42430388
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctc 260  Q
    |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||    
T  42430335 aacccacttgggttggc-tggtggtattgacttgggatcttggagtgtgctcctc 42430388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 46518627 - 46518685
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    ||||||| |||||||||| | ||||||||| |||||||||| || ||||||||||||||    
T  46518627 aaacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctc 46518685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 4222141 - 4222198
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    |||||| |||||||||| | ||||||||| |||||||||| || ||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctc 4222198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 11612307 - 11612355
Alignment:
Q  215 tgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 262  Q
    |||||||||||||||||||| |||||||| || || |||||||||||||    
T  11612307 tgggttggcctggtggtattcacttgggagctgggagtgtgctcctcct 11612355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 17554454 - 17554486
Alignment:
Q  211 catttgggttggcctggtggtattgacttggga 243  Q
    ||||||||||||||||||| |||||||||||||    
T  17554454 catttgggttggcctggtgatattgacttggga 17554486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 35119381 - 35119424
Alignment:
Q  205 caaacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  35119381 caaacccatttgggttggcctagtggtattgacttgggatctgg 35119424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 45709785 - 45709718
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||||||||||| ||||||||  ||||||||||| | |||||||||||||||| ||||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcgaggtctca 45709718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 15137553 - 15137619
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||||||||||||||||||| ||||||||||| | || |||||||||||||| | ||||||    
T  15137553 aacccacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctca 15137619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 22760863 - 22760929
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||||||||| |||||||||||||||||||| || || |||||||||||||| | ||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctca 22760929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 23301678 - 23301612
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||||||||||| |  || ||||||||||||| || ||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctca 23301612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 48771938 - 48772004
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||| ||||||||||| |||||||||| || ||||||||||||| || ||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctca 48772004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 25021411 - 25021343
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctcata 274  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||| | ||||||||    
T  25021411 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcata 25021343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 4161288 - 4161327
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct 246  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  4161288 aacccatttgggttggtctggtggtattggcttgggatct 4161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 23552117 - 23552184
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||| ||| ||||||||||||| || || |||||||||||||| | ||||||    
T  23552117 aaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctca 23552184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 41519333 - 41519274
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||||||||| |||||||||||||||||| | || |||||||||||||| | ||||||    
T  41519333 ttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctca 41519274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 7801180 - 7801234
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctc 260  Q
    |||||| |||| ||||||||||||||||||||||||| || || |||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctc 7801234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 23595736 - 23595786
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    ||||||||| ||||||||||||||||| ||||| || ||||||||||||||    
T  23595736 ttgggttggtctggtggtattgacttgagatctcggagtgtgctcctcctc 23595786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 25956368 - 25956314
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctc 260  Q
    ||||||||||||||||||| ||||||||| ||||||| | ||| |||||||||||    
T  25956368 aacccatttgggttggcctagtggtattggcttgggaccttggagtgtgctcctc 25956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 26459486 - 26459420
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||| | ||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 26459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 26526289 - 26526347
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 263  Q
    |||||||||||| |||| |||||||||||||||| |||| || | ||||||||||||||    
T  26526289 aaacccatttggattggtctggtggtattgacttaggatttgagagtgtgctcctcctc 26526347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 43590907 - 43590973
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||| ||||||| |  || |||||||||||||| | ||||||    
T  43590907 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctca 43590973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 25590611 - 25590676
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctcgacgtctc 271  Q
    |||||| |||||||| |||| |||||||| |||| |||||||  |||||||||||||||| |||||    
T  25590611 aacccacttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcgaggtctc 25590676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 41487361 - 41487398
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttggga 243  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  41487361 aaacccacttgggttggcctggtggtattggcttggga 41487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 21854550 - 21854614
Alignment:
Q  209 cccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||| ||||||||||||| |||||||| || ||||||| || |||||||||||||| | ||||||    
T  21854550 cccacttgggttggcctgatggtattggctagggatctgggagtgtgctcctcctcaaagtctca 21854614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 39714991 - 39715058
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||| ||||||||||||||||||| || || |||||||||||||||| ||||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctca 39715058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 37480073 - 37480141
Alignment:
Q  205 caaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    |||||||| |||||||||||||||||||||| ||||||| ||| | |||||||||||||| | ||||||    
T  37480073 caaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctca 37480141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 34041665 - 34041598
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||| ||||||||||||| ||||||| | |||||||||||||| | ||||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctca 34041598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 29197455 - 29197385
Alignment:
Q  204 ccaaacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgacgtctcat 273  Q
    ||||||||| |||||||||| ||||||||||||||||||| |  || ||||||||||||| || |||||||    
T  29197455 ccaaacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctccttgatgtctcat 29197385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 42327471 - 42327405
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||| | ||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 42327405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 3001386 - 3001435
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 262  Q
    |||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  3001386 ttgggttggcctagtggtattgacttgagatctaggagtgtgctcctcct 3001435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 4439055 - 4438998
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 263  Q
    |||||| ||||||||||||  ||||||| |||||||||||| | ||||||||||||||    
T  4439055 aacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctc 4438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 25931005 - 25931034
Alignment:
Q  206 aaacccatttgggttggcctggtggtattg 235  Q
    ||||||||||||||||||||||||||||||    
T  25931005 aaacccatttgggttggcctggtggtattg 25931034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 7799112 - 7799052
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcga 265  Q
    ||||||| |||||||| ||||||||||||| ||||||| |  || ||||||||||||||||    
T  7799112 aaacccacttgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcga 7799052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 16918653 - 16918597
Alignment:
Q  208 acccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 263  Q
    ||||| |||||||||||| |||||||||  ||||||||| || ||||||||||||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctc 16918597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 18259730 - 18259786
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcct 262  Q
    |||||||||| |||||||||||||||||| |||| ||| || | |||||||||||||    
T  18259730 aacccatttgagttggcctggtggtattggcttgagatttgagagtgtgctcctcct 18259786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 32106566 - 32106602
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga 243  Q
    |||||| |||||||||||||||||| |||||||||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttggga 32106602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 41202250 - 41202314
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtct 270  Q
    |||| ||||||||||| |||||||||||||| || ||||| || || ||||||||||||| ||||    
T  41202250 aacctatttgggttggtctggtggtattgacctgagatctgggagtatgctcctcctcgaagtct 41202314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 47044717 - 47044783
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||| ||||||||||||||||||||||||||||| | || ||||||||||||| ||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctca 47044783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 9241101 - 9241037
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctgg-cgtgtgctcctcctcgacgtct 270  Q
    |||||| |||||||||||||||||||||| ||||||||||||  |||||||||| ||||| ||||    
T  9241101 aacccacttgggttggcctggtggtattggcttgggatctggtagtgtgctcctgctcgaggtct 9241037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 51250599 - 51250557
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  51250599 aaacccacttgggttggcctggtggtattggcttgggatctgg 51250557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 51948480 - 51948546
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||| |||||| ||||||||||||||||| || |||||| ||||||||| ||||||    
T  51948480 aacccacttgggttgtcctggtagtattgacttgggatctaggagtgtgcccctcctcgaggtctca 51948546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 19229283 - 19229218
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||||||||||||||||||||||| | |||||  | |  ||||||||||||||| ||||||    
T  19229283 aacccatttgggttggcctggtggtattggcctgggacttagaatgtgctcctcctcgaggtctca 19229218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 19238653 - 19238588
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgacgtctc 271  Q
    |||||| |||||||||||||||||||||| ||||||| |  || |||||||||||||||| |||||    
T  19238653 aacccacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctc 19238588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 28635696 - 28635752
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 262  Q
    |||||| |||||||| |||||||||| ||||||||||||| || |||||||||||||    
T  28635696 aacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcct 28635752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 21660213 - 21660154
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||| ||||||||||||||||| ||||| || |||||||| ||||||| ||||||    
T  21660213 ttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctca 21660154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 21668977 - 21668918
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||||| ||||||||||||||||| ||||| || |||||||| ||||||| ||||||    
T  21668977 ttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctca 21668918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 27965588 - 27965545
Alignment:
Q  205 caaacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  27965588 caaacccacttgggttggcctagtggtattggcttgggatctgg 27965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 37109427 - 37109361
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||| | ||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 37109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 55427276 - 55427210
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||||||| ||||||| || || || ||||||| ||||| ||||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctca 55427210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 13496241 - 13496277
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttggga 243  Q
    |||||| |||||||||| |||||||||||||||||||    
T  13496241 aacccacttgggttggcatggtggtattgacttggga 13496277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 32157191 - 32157248
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctc 263  Q
    ||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttgggaccttggagtatgctcctcctc 32157248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 16852339 - 16852406
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||||| ||||||    
T  16852339 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 16852406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 968362 - 968428
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||| |||||||||||||||||| ||||||| || || |||||||||||||||| ||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 968428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 23361725 - 23361659
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||| |||||||||||||||||||||| | || |||||||||||||| | ||||||    
T  23361725 aacccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctca 23361659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 4830486 - 4830553
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||||||||||||   |||||||||| | ||||| |||||||||| ||||||    
T  4830486 aaacccacttgggttggcctggtggtatttgtttgggatctgagagtgtgttcctcctcgaggtctca 4830553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 5801046 - 5801113
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||| ||||||||||||  |||||||||| || |||||||||  ||||||||||||    
T  5801046 aaacccacttgggttgacctggtggtattagcttgggatctaggagtgtgctccgtctcgacgtctca 5801113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 19703564 - 19703497
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    ||||||| |||||||||||| ||||||||| ||||||| ||| | |||||||||||||| | ||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctca 19703497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 20994534 - 20994479
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcc 261  Q
    |||||| |||||||||||| ||||||||||||||||| || || ||||||||||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctcc 20994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 26688865 - 26688931
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||||||||| ||| ||||||| | ||| |||||||||||||| | ||||||    
T  26688865 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctca 26688931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 29858124 - 29858059
Alignment:
Q  208 acccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctcgacgtctca 272  Q
    ||||| |||| ||||||||||||||||| ||||||| |  || |||||||||||||||| ||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctca 29858059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 2203494 - 2203558
Alignment:
Q  209 cccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||| |||||||||||| ||||||||| ||||||| || || |||||||||||||| | ||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 2203558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 8484998 - 8485066
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctcat 273  Q
    ||||||| |||||||||||||||||||||  ||||||| ||| | ||||||||||| | || |||||||    
T  8484998 aaacccacttgggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcat 8485066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 22269013 - 22268973
Alignment:
Q  203 accaaacccatttgggttggcctggtggtattgacttggga 243  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  22269013 accaaacccacttgggttggcctggtggtgttggcttggga 22268973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 28783059 - 28783127
Alignment:
Q  206 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctcat 273  Q
    ||||||| |||||||||| ||||||||||| |||| || || || |||||||||||||| | |||||||    
T  28783059 aaacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcat 28783127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 11535 - 11594
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||| |||||||||||||||| |||||||||| || |||||||||||||||| ||||||    
T  11535 ttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctca 11594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 15399 - 15333
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    |||||| ||||||||| |||||||||||| ||||||| || || |||||||||||||||| ||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 15333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 12498 - 12465
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  12498 aacccatttgggttggcctggtggtattgacttg 12465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 22826 - 22793
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  22826 aacccatttgggttggcctggtggtattgacttg 22793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 909 - 850
Alignment:
Q  214 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgacgtctca 272  Q
    ||||| |||||||||||||||| |||||||||| ||  ||||||||||||||| ||||||    
T  909 ttggggtggcctggtggtattggcttgggatctgggaatgtgctcctcctcgaagtctca 850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 41709 - 41643
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcgacgtctca 272  Q
    |||||| |||||||||||| ||||||||| |||| |||||| | || ||||||||||||| ||||||    
T  41709 aacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctca 41643  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 42596 - 42555
Alignment:
Q  207 aacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgg 42555  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 10216 - 10260
Alignment:
Q  204 ccaaacccatttgggttggcctggtggtattgacttgggatctgg 248  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||    
T  10216 ccaaacccacttgggttggcctgatgatattggcttgggatctgg 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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