View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_35 (Length: 303)
Name: NF11426_low_35
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13976202 - 13976490
Alignment:
| Q |
1 |
tgtgcccaatacttccatctctgatcaacaacataatacatttcctatcatattggttcttgaagcgataaagtgacacataacataatgactatattcg |
100 |
Q |
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| T |
13976202 |
tgtgcccaatacttccatctctgatcaacaacataatacatttcctatcatattggttcttgaagggatgaagtgacacataacataatgactatattcg |
13976301 |
T |
|
| Q |
101 |
aggatataggaatgaaattcttacataatatgaaaagnnnnnnnnnnnngtttgtctttttctcttcaattggattaggtttatgtctcctcaatttatt |
200 |
Q |
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| T |
13976302 |
aggatataggaatgaaattcttacataatatgaaaag--ctttttttttgtttgtctttttc-cttcaattggattaggtttatgtctcctcaatttatt |
13976398 |
T |
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| Q |
201 |
tttcataaatgaatttctatcagat-nnnnnnnnnttacttatatcgttttgtgctatcataacaaatatatatctcagatgcatttgccta |
291 |
Q |
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| T |
13976399 |
tttcataaatgaatttctatcagataaaaaaaatattacttatatcgttttgtgctatcataacaaatatatatctcagatgcatttgccta |
13976490 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 250316 - 250349
Alignment:
| Q |
90 |
gactatattcgaggatataggaatgaaattctta |
123 |
Q |
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| T |
250316 |
gactatattcgagcatataggaatgaaattctta |
250349 |
T |
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