View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_36 (Length: 296)
Name: NF11426_low_36
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14560238 - 14560373
Alignment:
| Q |
1 |
gttattaattcagagtctctatcaactactcagaatctcatccacttttatgatagatagttcaaggatatgtttgattgataaaaagatacttggttat |
100 |
Q |
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| T |
14560238 |
gttattaattcagagtctctatcaactactcagaatctcatccacttttatggtagatagttcaaggatatgtttgattgataaaaaggtacttggttat |
14560337 |
T |
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| Q |
101 |
gctattatcttaaggataaatagtttatgacaagaa |
136 |
Q |
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| T |
14560338 |
gctattatcttaaggataaatagtttatgacaagaa |
14560373 |
T |
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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 142 - 285
Target Start/End: Original strand, 14560342 - 14560485
Alignment:
| Q |
142 |
ttattttaagaataaatagtttatgacaagaattggttatattattatcttataacagataaaaggtattagataggaaaggaaaacttacatgcnnnnn |
241 |
Q |
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| T |
14560342 |
ttatcttaaggataaatagtttatgacaagaattggttatgttattatcttacaacagataaaaggtattagataggaaaggaaaacttacatgcttttt |
14560441 |
T |
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| Q |
242 |
nnctcatcatttctacatttatctccttgcctattgcttcttct |
285 |
Q |
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| T |
14560442 |
ttctcatcatttctacacttatctccttgcctattgcttcttct |
14560485 |
T |
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