View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_37 (Length: 296)
Name: NF11426_low_37
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_37 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 33385821 - 33386102
Alignment:
| Q |
15 |
gattcaaaaaacaccaaaataattgatggaagaaacatgcctaaaggtgtacaagaagatcgtaatcaaacatgaagctggcaagagtccaattacatgg |
114 |
Q |
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| T |
33385821 |
gattcaaaaaacaccaaaataattgatggaagaaacatgcctaaaggtgtacaagaagatcataatcaaacatgaagctggcaagagtccaattacatgg |
33385920 |
T |
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| Q |
115 |
tctatacattataggaggatccagcaaacctccaagaacttttgtcttcttttgatgcatattagtggcaagagttcataaataatgggatggattctgt |
214 |
Q |
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| T |
33385921 |
tctatacattataggaggatccagcaaacctccaagaagttttgtcttcttttgatgcatattagtggcaagagttcataaataatgggatggattctgt |
33386020 |
T |
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| Q |
215 |
agagtgtaacaagacctgaaatttagtacacttgccttcttattgcaattctataggttataaacaaattttgaaaagaaac |
296 |
Q |
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| T |
33386021 |
agagtgtaacaagacctgaaatttagtacacttgccttcttattgcaattctataggttataaacaaattttgaaaagaaac |
33386102 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 25428290 - 25428240
Alignment:
| Q |
7 |
gaagcagagattcaaaaaacaccaaaataattgatggaagaaacatgccta |
57 |
Q |
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| T |
25428290 |
gaagcaaagattcagaaaacaccaaaataattgatgggaggaacatgccta |
25428240 |
T |
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