View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_low_4 (Length: 676)

Name: NF11426_low_4
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_low_4
NF11426_low_4
[»] chr4 (19 HSPs)
chr4 (1-666)||(36984564-36985229)
chr4 (354-646)||(36986063-36986363)
chr4 (9-163)||(36985214-36985372)
chr4 (9-179)||(36980675-36980847)
chr4 (398-509)||(36996255-36996369)
chr4 (231-349)||(36981025-36981143)
chr4 (10-179)||(36986369-36986545)
chr4 (377-507)||(36980360-36980495)
chr4 (237-347)||(36996069-36996179)
chr4 (247-329)||(36996931-36997013)
chr4 (398-494)||(36981229-36981327)
chr4 (9-172)||(36996550-36996724)
chr4 (398-480)||(36987321-36987405)
chr4 (244-346)||(37000716-37000818)
chr4 (424-494)||(36997115-36997185)
chr4 (377-494)||(37000889-37001009)
chr4 (239-346)||(36980185-36980292)
chr4 (12-75)||(36979088-36979152)
chr4 (615-666)||(36980639-36980690)


Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 666
Target Start/End: Original strand, 36984564 - 36985229
Alignment:
Q  1 ctgtgtcactctgctgttcctttggtttccactgtggctgacgatgcatttgacttggccaaattttaggcatgaggatatcctgccacctccaaatatt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36984564 ctgtgtcactctgctgttccattggtttccactgtggctgacgatgcatttgacttggccaaattttaggcatgaggatatcctgccacctccaaatatt 36984663  T
Q  101 agcatagagactaaatacttcatgcaagccaacccgatataattggaagaatacacattttttgaacattttcaacataaaactatggttgnnnnnnnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  36984664 agcatagagactaaatacttcatgcaagccaacccgatataattggaagaatacacattttttgaacattttcaacataaaactatggttgaaaaaaaga 36984763  T
Q  201 nnnnnnnnnctttgggacaatagcctacaaattttgagtgaatatatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctc 300  Q
             ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36984764 aaaaaaaaactttgggtcaatagcctacaaattttgagtgaatatatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctc 36984863  T
Q  301 caaatctttgatgtctttgtgttctgtttggagtctatctccatttgtccccttgagattgggagatgtaaaatttactcaaacaagaacttgtaataag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36984864 caaatctttgatgtctttgtgttctgtttggagtctatctccatttgtccccttgagattgggagatgtaaaatttactcaaacaagaacttgtaataag 36984963  T
Q  401 aactatattaatttcacaacacttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatccttttg 500  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36984964 aactatattaatttcacaacacttaacatcgaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatccttttg 36985063  T
Q  501 cttctgcagagcagcactgtgtttccttccactgaagtgggcattcaagatttcctctgctgttatcaaacataaatcacaagtccggtctttctgcaaa 600  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36985064 cttctgcagagcagcactgtgtttccttccactgaagcgggcattcaagatttcctctgctgttgtcaaacataaatcacaagtccggtctttctgcaaa 36985163  T
Q  601 tccatctgcgtagaagaactccgaggaacctctccaccagccctgtccccctctactgttcctttg 666  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36985164 tccatctgcatagaagaactctgaggaacctctccaccagccctgtccccctctactgttcctttg 36985229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 354 - 646
Target Start/End: Original strand, 36986063 - 36986363
Alignment:
Q  354 tgagattgggagatgtaaaatttactcaaacaagaacttgtaataagaactatattaatttcacaacacttaacatcaaaactttacctttagtatttct 453  Q
    ||||||||||| |||||||||| ||||| |||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  36986063 tgagattgggacatgtaaaattgactcatacaagaacttgtaacaaaaacta-attgatttcacaacacttaacatcaaaactttatctttagtatttct 36986161  T
Q  454 ttattatcagtagttgtgatttcatttatcgcttctgcatccttttgcttctgcagagcagcactgtgtttccttccactgaagtgggcattcaagattt 553  Q
    ||||| ||||||| | ||||||||||| || | ||||||||||||||| |||| |||||||| ||||||||| ||||||| | ||||| |||||||||||    
T  36986162 ttattttcagtagctatgatttcatttttcacctctgcatccttttgcctctgaagagcagctctgtgtttctttccactcaggtgggaattcaagattt 36986261  T
Q  554 cctc------tgctgttatcaaacataaatcacaagtccggtctttctgcaaatccatctgcgtaga---agaactccgaggaacctctccaccagccct 644  Q
     |||      || ||||| |||||||||| |||||||||  ||||||||||  ||| |||| |||||   ||||||| ||||||||||||||||||| ||    
T  36986262 tctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtgtagaagtagaactctgaggaacctctccaccagcgct 36986361  T
Q  645 gt 646  Q
    ||    
T  36986362 gt 36986363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 36985214 - 36985372
Alignment:
Q  9 ctctgctgttcctttggtttccactgtggctgacgatgcattt-gacttggccaaattttaggcatga---ggatatcctgccacctccaaatattagca 104  Q
    |||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||| ||||||||| ||||   | ||||||||| || |||||||| |||||    
T  36985214 ctctactgttcctttggtttccactgaggctgatgattcattttgacttggcccaattttaggtatgacaggaatatcctgcaacatccaaataatagca 36985313  T
Q  105 tagagactaaatacttcatgcaagccaacccgatataattggaagaatacacatttttt 163  Q
    |||||||||| ||||||||| || || ||||| ||||||||||||||||||||||||||    
T  36985314 tagagactaagtacttcatgtaaacctacccggtataattggaagaatacacatttttt 36985372  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 36980675 - 36980847
Alignment:
Q  9 ctctgctgttcctttggtttccactgtggctgacgatgca-tttgacttggccaaattttaggcatga---ggatatcctgccacctccaaatattagca 104  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||  ||||||   | ||||||||| || ||||||||| ||||    
T  36980675 ctctgctgttcctttggtttccactgtgactgatgatgcattttgacttggcctaatttttagcatgacaggaatatcctgcaacatccaaatataagca 36980774  T
Q  105 tagagactaaatacttcatgcaagccaacccgatataattggaagaatacacattttttgaacattttcaacata 179  Q
    ||||||| || |||||||| |||| |||||| |||||||||||| |||| ||| |||| ||||||||||||||||    
T  36980775 tagagaccaagtacttcatacaag-caacccaatataattggaacaataaaca-ttttcgaacattttcaacata 36980847  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 398 - 509
Target Start/End: Original strand, 36996255 - 36996369
Alignment:
Q  398 aagaactatatt-aatttcacaac--acttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc 494  Q
    |||||||||||| ||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||| || ||||||||||    
T  36996255 aagaactatatttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagccatgatttcatttgtcccttctgcatc 36996354  T
Q  495 cttttgcttctgcag 509  Q
    |||||||||||||||    
T  36996355 cttttgcttctgcag 36996369  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 36981025 - 36981143
Alignment:
Q  231 attttgagtgaatatatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgtttg 330  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||| ||||||||| |||||| ||| ||| ||||| || ||||||||    
T  36981025 attttgagtgaatatatgaatgaggccttacttgcttggttgcaggaatttcttttttctcaatagcttccaaaccttggatatctttttgctctgtttg 36981124  T
Q  331 gagtctatctccatttgtc 349  Q
    ||| || ||||||||||||    
T  36981125 gagcctttctccatttgtc 36981143  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 36986369 - 36986545
Alignment:
Q  10 tctgctgttcctttggtttccactgtggctgacgatgcattt-gacttggccaaattttaggcatga---ggatatcctgccacctccaaatattagcat 105  Q
    ||||||||| | |||||||||||||||||| | ||||||||| ||||||||| |||||| |||| ||   | ||||||||| || ||||| |||||||||    
T  36986369 tctgctgttacattggtttccactgtggctaatgatgcattttgacttggcccaattttcggcaagacaggaatatcctgcaacatccaagtattagcat 36986468  T
Q  106 agagactaaatacttcatgcaagccaacccgatataattggaagaatacacat----tttttgaacattttcaacata 179  Q
    |||||| || |||||| ||||||||||||  ||||||| ||| |||||| ||     |||||||||||||||||||||    
T  36986469 agagaccaagtacttcctgcaagccaacca-atataatcggaggaatactcacactgtttttgaacattttcaacata 36986545  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 377 - 507
Target Start/End: Original strand, 36980360 - 36980495
Alignment:
Q  377 actcaaacaagaacttgtaataagaactata--ttaatttcacaacacttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatt 474  Q
    ||||| |||||||||||||  ||||| ||||  ||||||||| ||||||| ||||||||||||||||||  |||||| |||||||||||||| | || ||    
T  36980360 actcatacaagaacttgtagcaagaaatatatattaatttcagaacacttcacatcaaaactttaccttgggtatttttttattatcagtagctatggtt 36980459  T
Q  475 tcat---ttatcgcttctgcatccttttgcttctgc 507  Q
    | ||   || ||||||||||| ||||||||||||||    
T  36980460 ttatttgttgtcgcttctgcacccttttgcttctgc 36980495  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 36996069 - 36996179
Alignment:
Q  237 agtgaatatatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgtttggagtct 336  Q
    |||||||||||| ||||||| ||||||  | ||||| |||||  || |||| |||||||||||||||||| |||||||||||||  ||||||| ||||||    
T  36996069 agtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatccttgatgtctttgttctctgtttcgagtct 36996168  T
Q  337 atctccatttg 347  Q
     ||||||||||    
T  36996169 ttctccatttg 36996179  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 36996931 - 36997013
Alignment:
Q  247 tgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgttt 329  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||| |||||  |||||||    
T  36996931 tgaatgaagccttacttgtttggttgcaggaatttcttttttctcaatagcttccaaatctctgatgtatttgttctctgttt 36997013  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 398 - 494
Target Start/End: Original strand, 36981229 - 36981327
Alignment:
Q  398 aagaactatattaatttcacaac--acttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc 494  Q
    ||||||||||||||||||||||   ||||| |||||||||||||||||||  |||||||||| ||| |||| ||  ||||||||| |||||||||||||    
T  36981229 aagaactatattaatttcacaaatgacttagcatcaaaactttacctttaacatttctttatcatcggtagctgaaatttcatttgtcgcttctgcatc 36981327  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 36996550 - 36996724
Alignment:
Q  9 ctctgctgttcctttggtttccactgtggctgacgatgcattt-gacttggccaaattttaggcatga---ggatatcctgccacctccaaatattagca 104  Q
    ||||||||||||||| |||||||||||| |||| ||||||||| ||||||||| ||||| ||| ||||   | ||||||||  || |||||||||| |||    
T  36996550 ctctgctgttcctttagtttccactgtgactgatgatgcattttgacttggcccaatttcaggaatgacaggaatatcctgaaacatccaaatatttgca 36996649  T
Q  105 tagagactaaatacttcatgcaa-------gccaacccgatataattggaagaatacacattttttgaacatttt 172  Q
    |  || |  |||| |||||||||       ||| ||||||||||||||||||||||||||||| || ||||||||    
T  36996650 tcaaggccgaatatttcatgcaacttgcaagccgacccgatataattggaagaatacacatttcttaaacatttt 36996724  T

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Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 36987321 - 36987405
Alignment:
Q  398 aagaactatattaatttcacaac--acttaacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcattt 480  Q
    ||||||||||||||| |||||||  |||||| || ||||||| |||||||| ||||||||||||||||||| | |||||||||||    
T  36987321 aagaactatattaatgtcacaactgacttaatattaaaacttcacctttagcatttctttattatcagtagctatgatttcattt 36987405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 37000716 - 37000818
Alignment:
Q  244 atatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgtttggagtctatctcca 343  Q
    ||||||||||| | ||||||| |||||||  ||||  ||| ||| |||| ||||||||||||| |||||||| |||| |||| |||||||||| ||||||    
T  37000716 atatgaatgaatccttacttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctcca 37000815  T
Q  344 ttt 346  Q
    |||    
T  37000816 ttt 37000818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 36997115 - 36997185
Alignment:
Q  424 taacatcaaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc 494  Q
    |||||||||||||||||| |||| || ||||||| |||||||| | ||||||||||| || ||||||||||    
T  36997115 taacatcaaaactttaccattagcatatctttatcatcagtagctatgatttcatttctcacttctgcatc 36997185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 37000889 - 37001009
Alignment:
Q  377 actcaaacaagaacttgtaataagaactatattaatttcacaac--acttaacatc-aaaactttacctttagtatttctttattatcagtagttgtgat 473  Q
    ||||| |||||||||||||| || |||||||||||| |||||||  |||| ||| | ||||||||||||||| |||||||| | ||| ||||  | || |    
T  37000889 actcatacaagaacttgtaacaaaaactatattaatgtcacaactgactttacaccaaaaactttacctttaatatttcttcactattagtatctatggt 37000988  T
Q  474 ttcatttatcgcttctgcatc 494  Q
    ||||||| || ||||||||||    
T  37000989 ttcatttgtcacttctgcatc 37001009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 36980185 - 36980292
Alignment:
Q  239 tgaatatatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgtttggagtctat 338  Q
    ||||||||||||| || | ||||||| |||||| ||| ||| |||||||  ||||||||||||||||  |||||||  || |  |||||||||| ||| |    
T  36980185 tgaatatatgaattaatccttacttgcttggttacagaaatttcttttttatcaatagcctccaaatacttgatgttctttttctctgtttggaatcttt 36980284  T
Q  339 ctccattt 346  Q
    ||||||||    
T  36980285 ctccattt 36980292  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 36979088 - 36979152
Alignment:
Q  12 tgctgttcctttggtttccactgtggctgacgatgca-tttgacttggccaaattttaggcatga 75  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||||| |  ||||||||||||||    
T  36979088 tgctgttcctttagtttctactgtggctgatgatgcattttgacttgacgcaattttaggcatga 36979152  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 666
Target Start/End: Original strand, 36980639 - 36980690
Alignment:
Q  615 agaactccgaggaacctctccaccagccctgtccccctctactgttcctttg 666  Q
    ||||||||||||||| |||||||||||||| || | |||| |||||||||||    
T  36980639 agaactccgaggaacttctccaccagccctttcactctctgctgttcctttg 36980690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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