View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_low_41 (Length: 266)
Name: NF11426_low_41
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_41 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 27328409 - 27328500
Alignment:
| Q |
175 |
taaacctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtc |
266 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27328409 |
taaagctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtc |
27328500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 27328287 - 27328414
Alignment:
| Q |
13 |
tggagaaacaccatagacacactcgaacatgatcgttgatcatattatcaagattgtttgcagctgtccattcagacagctgt-----ccaggattttgg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||| |
|
|
| T |
27328287 |
tggacaaacaccatagacacactcgaacatgatcgttgatcatattatcaagattgtttgcagctgtc----cgaacagctgtctaagctaggattttgg |
27328382 |
T |
|
| Q |
108 |
atcctaaaacattaattcttccactataaagc |
139 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
|
|
| T |
27328383 |
atcctaaaacattaattcctccactataaagc |
27328414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University