View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_43 (Length: 263)
Name: NF11426_low_43
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_43 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 18948047 - 18948292
Alignment:
| Q |
18 |
acatctattctacatgtgcaggaaaaacattaatgcatttgaagttttaattatgtaacaaagatatcaaaattgtctcaagtattctaatagtataaaa |
117 |
Q |
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| T |
18948047 |
acatctattctacatgtgcaggaaaagcattaatgcatttgaagttttaattatgtaacaaagatatcaaaattgtctgaagtattctaatagtataaaa |
18948146 |
T |
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| Q |
118 |
ataatgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctcaaatatttctgcaaaacaagttatagaaccttt |
217 |
Q |
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| T |
18948147 |
ataatgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctcatatatttttgcaaaacaagttatagaaccttt |
18948246 |
T |
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| Q |
218 |
tggcgaaataatttgtgtttctgtttttcttgttatcatccagctt |
263 |
Q |
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| T |
18948247 |
tggcggaataatttgtgtttctgtttttcttgttatcatccagctt |
18948292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 18968154 - 18967968
Alignment:
| Q |
43 |
aacattaatgcatttgaagttttaattatgtaacaaagatatcaaaattgtctcaagtattctaatagtataaaaataatgacaactaatgtgcaagaaa |
142 |
Q |
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| T |
18968154 |
aacattaatacatttgatgttttaattatgtaacacagatactaaaattgtttgaagtattctaatagtataaaaataatgacaattaatgtgcaagcaa |
18968055 |
T |
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| Q |
143 |
ataagacactttatttaattgaaaatccattttaggtacctcaaatatttctgcaaaacaagttatagaaccttttggcgaaataat |
229 |
Q |
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| T |
18968054 |
ataagacactttatttaattgaaaatcaattttaggtacctcatatatttctgcaaatcaagttatagaaccttttgacggaataat |
18967968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 18993051 - 18992898
Alignment:
| Q |
105 |
taatagtataaaaataatgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctcaaatatttctgcaaaacaag |
204 |
Q |
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| T |
18993051 |
taatagtaataagataatgacaaccaatgtgcaggcaaataagacactttatttaattgaaaatcatttttaggtacctcatatattttggtaaaacaag |
18992952 |
T |
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| Q |
205 |
ttatagaaccttttggcgaaataatttgtgtttctgtttttcttgttatcatcc |
258 |
Q |
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| T |
18992951 |
ttaaagaacctcttggagaaataatttgtgtttatgtttttcttgttatcatcc |
18992898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 19005627 - 19005487
Alignment:
| Q |
118 |
ataatgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctcaaatatttctgcaaaacaagttatagaaccttt |
217 |
Q |
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| T |
19005627 |
ataatgacaaccaatgtccaggcaaataagacactttatttaattgaaaatcaattttaggtacctcatatattttggcaaaacaagttaaagaacctct |
19005528 |
T |
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| Q |
218 |
tggcgaaataatttgtgtttctgtttttcttgttatcatcc |
258 |
Q |
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| T |
19005527 |
tggaggaataatttgtgtttatgtttttcttgttatcatcc |
19005487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 11174631 - 11174700
Alignment:
| Q |
121 |
atgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctcaaatat |
190 |
Q |
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| T |
11174631 |
atgacaagtaacgtgcaagcaaataagataccctatttaatagaaagttcattttaggtacctcatatat |
11174700 |
T |
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