View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_47 (Length: 249)
Name: NF11426_low_47
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 49370225 - 49370454
Alignment:
| Q |
9 |
aggttaagcaaaattattacacttgcattgaaataaatataccactttagttaagattacacatagatgaatttgagattacacataaaacataaaattg |
108 |
Q |
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| T |
49370225 |
aggttaagcaaaatta---cacttgcattgaaataaatataccactttagttaagattacacatagatgaatttgagattacacataaaacataaaattg |
49370321 |
T |
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| Q |
109 |
tatttgtttacaacatttgaaatatcatcaaatttgaaatatcaacgagaaacaggaagaaccttattaacaatatcctggctaagagcagcaatctgag |
208 |
Q |
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| T |
49370322 |
tatttgtttacaacatttgaaatatcatcaaatttgaaatatcaacgagaaacaggaagaaccttattaacaatatcctggctaagagcagcaatctgag |
49370421 |
T |
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| Q |
209 |
aatcaagagctttaacagtttcttccctttgct |
241 |
Q |
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| T |
49370422 |
aatcaagagctttaacagtttcttccttttgct |
49370454 |
T |
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