View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_48 (Length: 248)
Name: NF11426_low_48
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_48 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 8575711 - 8575957
Alignment:
| Q |
2 |
ggaggagcagagaaattaaacaaaccgagcaacttgttatcataagctgtaattctctcaccctggtacaccttaaccgtgacactgtatttgttatagt |
101 |
Q |
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| T |
8575711 |
ggaggaacagagaaattaaacaaaccgagcaacttgttatcataagctgtaattctctcaccctggtacaccttaaccgtgacactgtatttgttatagt |
8575810 |
T |
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| Q |
102 |
aatcataacactcatagtatgtttttgtcttttcgacagtaacaggaatggaagtgttccgaggaatcataacactcatgagatttcctagctctgatac |
201 |
Q |
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| T |
8575811 |
aatcataacactcatagtatgtttttgtcttttcgacagtaacaggaatggaagtgttccgaggaatcataacactcatgagatttcctagctctgatac |
8575910 |
T |
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| Q |
202 |
accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacat |
248 |
Q |
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| T |
8575911 |
accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacat |
8575957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 8581224 - 8581330
Alignment:
| Q |
141 |
taacaggaatggaagtgttccgaggaatcataacactcatgagatttcctagctctgatacaccaaacgacaacggtgtaacatctcgtaacaccaagtt |
240 |
Q |
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| T |
8581224 |
taacaggaatggacgtattcctaggaatcacgacactcatgagatttccttgtaattctacaccaagtgacaatggtgtaacatctcgcaaaatcaagtt |
8581323 |
T |
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| Q |
241 |
tggaaca |
247 |
Q |
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| T |
8581324 |
tggaaca |
8581330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 8581097 - 8581180
Alignment:
| Q |
2 |
ggaggagcagagaaattaaacaaaccgagcaacttgttatcataagctgtaattctctcaccctggtacaccttaaccgtgaca |
85 |
Q |
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| T |
8581097 |
ggaggaacagagaaatcaaacaaacccagcaagttgttatcacttgctcttgttctctcaccctcgtacaccttaatcgtgaca |
8581180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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