View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_low_50 (Length: 242)

Name: NF11426_low_50
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_low_50
NF11426_low_50
[»] chr2 (3 HSPs)
chr2 (1-224)||(18252708-18252931)
chr2 (1-224)||(18256637-18256860)
chr2 (1-223)||(18245605-18245827)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18252931 - 18252708
Alignment:
Q  1 cggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggt 100  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18252931 cggctatatctaaacgagcaatggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggt 18252832  T
Q  101 gtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18252831 gtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaa 18252732  T
Q  201 tctgctacgcagaaatcgactacg 224  Q
    ||||||||||||||||| ||||||    
T  18252731 tctgctacgcagaaatctactacg 18252708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18256637 - 18256860
Alignment:
Q  1 cggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggt 100  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18256637 cggctatatctaaacgtgcaatggatattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggt 18256736  T
Q  101 gtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18256737 gtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaa 18256836  T
Q  201 tctgctacgcagaaatcgactacg 224  Q
    ||||||||||||||||| ||||||    
T  18256837 tctgctacgcagaaatctactacg 18256860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18245827 - 18245605
Alignment:
Q  1 cggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggt 100  Q
    |||||| |||||||||||||| ||| |||||||||||||||| ||| | ||||||  |||| | ||||| ||| ||||| |||||||||||||||| |||    
T  18245827 cggctaaatctaaacgcgcaagggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggt 18245728  T
Q  101 gtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaa 200  Q
    |||||| ||||| ||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||| || |||||||||||   |||||||    
T  18245727 gtttccggctgcagctaggccgtggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaa 18245628  T
Q  201 tctgctacgcagaaatcgactac 223  Q
    ||||||||||||||||| |||||    
T  18245627 tctgctacgcagaaatctactac 18245605  T

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