View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_56 (Length: 238)
Name: NF11426_low_56
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9318936 - 9319159
Alignment:
| Q |
1 |
tcacattattatcaagtgtctcttgcgaaaaattggttcaacagacaatataaacaaaagttgttgagtgtaatagatttcaccatattttatttgaagt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9318936 |
tcacattattattaagtgtctcttgcgaaaaattggttcaacagacaatataaacaaaagttgttgagtgtaatagatttcaccatattttatttgaagt |
9319035 |
T |
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| Q |
101 |
cattggttttatcgtttacagttaatagtagttattgatctatcttgatcaaaatattcttcaacaaaactctttatattcaaattagtggtttagaagt |
200 |
Q |
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| T |
9319036 |
cattggttttctcgtttacagttaatagtagttattgagctatcttgatcaaaatattcttcaacaaaactcttcatattcaaattagtggtttagaagt |
9319135 |
T |
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| Q |
201 |
aaggtgcttaccttattcttcatg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
9319136 |
aaggtgcttaccttattcttcatg |
9319159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9349272 - 9349497
Alignment:
| Q |
1 |
tcacattattatcaagtgtc-tcttgcgaaaaattggttcaacagacaatataaacaaaagttgttgagtgtaatagatttcaccatatttt-atttgaa |
98 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9349272 |
tcacattattattaagtgtcctcttgcgaaaaattggttcaacagacaatataaacaaaagttgttgagtgtaatagatttcaccatatttttatttgaa |
9349371 |
T |
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| Q |
99 |
gtcattggttttatcgtttacagttaatagtagttattgatctatcttgatcaaaatattcttcaacaaaactctttatattcaaattagtggtttagaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9349372 |
gtcattggttttatcgtttacagttaatagtagttattgagctatcttgatcaaaatattcttcaacaaaactctttatattcaaattagtggtttagaa |
9349471 |
T |
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| Q |
199 |
gtaaggtgcttaccttattcttcatg |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9349472 |
gtaaggtgcttaccttattcttcatg |
9349497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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