View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_low_58 (Length: 231)
Name: NF11426_low_58
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_58 |
 | |
|
| [»] scaffold0254 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 2162128 - 2162260
Alignment:
| Q |
23 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2162128 |
tcaaaagaagacatcatttgatccatccaagaaattgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
2162227 |
T |
|
| Q |
123 |
atagggtactatgacagcttcaaaaacatgaac |
155 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |
|
|
| T |
2162228 |
atagggtactatgacagctacaaaaacaagaac |
2162260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 2168291 - 2168423
Alignment:
| Q |
23 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2168291 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2168390 |
T |
|
| Q |
123 |
atagggtactatgacagcttcaaaaacatgaac |
155 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |
|
|
| T |
2168391 |
atagggtactatgacagctacaaaaacaagaac |
2168423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 2179924 - 2180056
Alignment:
| Q |
23 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2179924 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2180023 |
T |
|
| Q |
123 |
atagggtactatgacagcttcaaaaacatgaac |
155 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |
|
|
| T |
2180024 |
atagggtactatgacagctacaaaaacaagaac |
2180056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 2207160 - 2207348
Alignment:
| Q |
23 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
122 |
Q |
| |
|
||||||||||| || |||| ||||||| || |||| ||||||||||||| || ||| || ||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2207160 |
tcaaaagaagatatcatttaatccatcaaataaacagaatgaaatgaagggatgtatagcacaagttgaatggtacaaaaagaaaacaacaaatcttgac |
2207259 |
T |
|
| Q |
123 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattggga |
211 |
Q |
| |
|
||||||||||||||||| | |||||||||| || | ||||||| |||||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
2207260 |
atagggtactatgacagttacaaaaacatgtacgaaatatctgattatgatgttgttgagtttcataaaaagctcacaagttattggga |
2207348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 2408 - 2276
Alignment:
| Q |
23 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2408 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2309 |
T |
|
| Q |
123 |
atagggtactatgacagcttcaaaaacatgaac |
155 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |
|
|
| T |
2308 |
atagggtactatgacagctacaaaaacaagaac |
2276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 14978 - 14844
Alignment:
| Q |
23 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaat-gaaaacaaaaaat-cttg |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
14978 |
tcaaaagaagacatcatttgatccatccaagaaattgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatagaaaacaaaaaatacttg |
14879 |
T |
|
| Q |
121 |
acatagggtactatgacagcttcaaaaacatgaac |
155 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14878 |
acatagggtactatgacagctacaaaaacaagaac |
14844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 27781512 - 27781362
Alignment:
| Q |
6 |
gaagaactatccatccatcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatga |
105 |
Q |
| |
|
|||||| ||| |||||| || ||||||| || ||| |||||||||||||| ||||||| ||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
27781512 |
gaagaaatattcatccaccagaagaagatatcgttttatccatccaagaaattgaatgacgtgaaggtacatatggcccaacttgaatggttcaaaatgg |
27781413 |
T |
|
| Q |
106 |
aaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaaca |
156 |
Q |
| |
|
||| || |||| | ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
27781412 |
caactaagaatcaacaaatagggtactatgacagctacaaaaatatgaaca |
27781362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 27785379 - 27785263
Alignment:
| Q |
39 |
tttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgaca |
138 |
Q |
| |
|
||||||||||| ||||| ||||||| | |||| ||||||| ||||||||||||||||||| |||| | || ||| | |||||||| ||||||| |
|
|
| T |
27785379 |
tttgatccatcaaagaagttgaatgacaggaaggtggatatggcccaacttgaatggtacaaaaagaaatctaagaatgaacaaatagggtattatgaca |
27785280 |
T |
|
| Q |
139 |
gcttcaaaaacatgaac |
155 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27785279 |
gcttcaaaaacatgaac |
27785263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 19488225 - 19488181
Alignment:
| Q |
170 |
tgatgttgttaactttcataaaaagctcacaatttattgggaaaa |
214 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
19488225 |
tgatgttgttgagtttcataaaaagctcacaatttattgggaaaa |
19488181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University