View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_59 (Length: 228)
Name: NF11426_low_59
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_59 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 36425576 - 36425797
Alignment:
| Q |
7 |
gtttctggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425576 |
gtttctggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatga |
36425675 |
T |
|
| Q |
107 |
caactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425676 |
caactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagt |
36425775 |
T |
|
| Q |
207 |
caaaagagccaatggagccggt |
228 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36425776 |
caaaagagccaatggagccggt |
36425797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 36411415 - 36411631
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgacaact |
111 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||| |||||| |||||| | |||||||||| |||||||| ||||||| |||||||||||||||| |
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| T |
36411415 |
tggcgtggtggacattggaatggagcaatattagtaggcctacctcatatgataggagatatggcagttcgtaatgtttcttgggttgaagatgacaact |
36411514 |
T |
|
| Q |
112 |
atgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagtcaaaa |
211 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
36411515 |
atgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgtgggacagtcaaga |
36411614 |
T |
|
| Q |
212 |
gagccaatggagccggt |
228 |
Q |
| |
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||| ||||||||||||| |
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| T |
36411615 |
gagtcaatggagccggt |
36411631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 36416746 - 36416962
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgacaact |
111 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||| |||||| |||||| | |||||||||| |||||||| ||||||| |||||||||||||||| |
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| T |
36416746 |
tggcgtggtggacattggaatggagcaatattagtaggcctacctcatatgataggagatatggcagttcgtaatgtttcttgggttgaagatgacaact |
36416845 |
T |
|
| Q |
112 |
atgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagtcaaaa |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
36416846 |
atgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgtgggacagtcaaga |
36416945 |
T |
|
| Q |
212 |
gagccaatggagccggt |
228 |
Q |
| |
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||| ||||||||||||| |
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| T |
36416946 |
gagtcaatggagccggt |
36416962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 36368810 - 36369026
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgacaact |
111 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||| || | ||| |||||||| |||||||||||||||| |
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| T |
36368810 |
tggcgtggtggacactggaacggagaattatttgtaggtatacctaatatgaaacgagatatgaccacttttaatgtttctttggttgaagatgacaact |
36368909 |
T |
|
| Q |
112 |
atgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagtcaaaa |
211 |
Q |
| |
|
|||||||||| | ||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36368910 |
atgtagcacttacgtataacatgttcgataagtctgtcattactagaatagcggttcagcaatctggtttctttcaaacattcatgtgggacagtcaaaa |
36369009 |
T |
|
| Q |
212 |
gagccaatggagccggt |
228 |
Q |
| |
|
||||||||||| ||||| |
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| T |
36369010 |
gagccaatggaaccggt |
36369026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 36373426 - 36373639
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgac---a |
108 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| || || |||||||| || |||||||| | |
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| T |
36373426 |
tggcgtggtggacattggaacggagcaatcttagtaggtgcacctaatatgaaacgagatatggcgattttgaatgtttcttttgtggaagatgatgata |
36373525 |
T |
|
| Q |
109 |
actatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagtca |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||||||| |||||| ||| ||| ||| |
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| T |
36373526 |
actatgtagcaatctcatataacatgtttgataagtctgtcatagctaggatagttgttcagcaatctggtttctttcaaatattcacttggaacaatca |
36373625 |
T |
|
| Q |
209 |
aaagagccaatgga |
222 |
Q |
| |
|
||| || ||||||| |
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| T |
36373626 |
aaaaagtcaatgga |
36373639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 36387385 - 36387604
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgac---a |
108 |
Q |
| |
|
||||| ||||||||||||||||||| || ||| ||||| |||| ||||||||||||||||||| || || |||||||| | |||||||| | |
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|
| T |
36387385 |
tggcgcggtggacattggaacggagcaaccttaataggtgcacctgatatgaaacgagatatggcgattttgaatgtttcttttttggaagatgatgata |
36387484 |
T |
|
| Q |
109 |
actatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagtca |
208 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
36387485 |
actatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtgggacagtca |
36387584 |
T |
|
| Q |
209 |
aaagagccaatggagccggt |
228 |
Q |
| |
|
|| | ||||||||||||||| |
|
|
| T |
36387585 |
aacgggccaatggagccggt |
36387604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 36397168 - 36397378
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgacaact |
111 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||| || | ||| | |||||| || ||||| || |||| |
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|
| T |
36397168 |
tggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaacttttaatgcttcttttgtggaagaagataact |
36397267 |
T |
|
| Q |
112 |
atgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtgggacagtcaaaa |
211 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| |||||| ||||| |||| |||||||||||||||||| |||||| |||||| ||| ||| |||||| |
|
|
| T |
36397268 |
atgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggtttcattcaaatattcacttggaacaatcaaaa |
36397367 |
T |
|
| Q |
212 |
gagccaatgga |
222 |
Q |
| |
|
||| ||||||| |
|
|
| T |
36397368 |
gagtcaatgga |
36397378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 36404101 - 36404290
Alignment:
| Q |
12 |
tggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttgaagatgacaact |
111 |
Q |
| |
|
||||||| |||||||||||| |||||| | || | |||| |||||||||||||||||||||||| | |||||||||||| || |||||||| |||| |
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|
| T |
36404101 |
tggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcttttgtggaagatgaaaact |
36404200 |
T |
|
| Q |
112 |
atgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtggg |
201 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||||| ||||| ||| ||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
36404201 |
ccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtggg |
36404290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 36433509 - 36433648
Alignment:
| Q |
83 |
taacgtttctttcgttgaagatgacaactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttc |
182 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| ||||||||||| | ||||||||| || |||||| |||| |||||||| | ||||||||||||||||||||| |
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|
| T |
36433509 |
taacatttcttttgttcaagatgacaacaatgtagcactcacgtataacatggttgataagtctgtcgttactaggatggtggttcagcaatctggtttc |
36433608 |
T |
|
| Q |
183 |
tttcaaacattcacgtgggacagtcaaaagagccaatgga |
222 |
Q |
| |
|
||||||| ||| | |||||||| | |||| || ||||||| |
|
|
| T |
36433609 |
tttcaaatattaatgtgggacaataaaaaaagtcaatgga |
36433648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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