View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_6 (Length: 627)
Name: NF11426_low_6
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31219681 - 31219438
Alignment:
| Q |
1 |
gaaatctaaacttgtataccacttatatacatgtgtacgaagagtgctatacttagatcctttgaatcacaaaacgtttcaatgtccatgaatcacaata |
100 |
Q |
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| T |
31219681 |
gaaatataaacttgtataccacttatatacatatgtacgaagagtgctatacttagattctttgaatcacaaaacgtttcaatgtccatgaatcacaata |
31219582 |
T |
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| Q |
101 |
gcgtgagttctaagactaagcct-------acaaaatgttgaaaacgtgaattgctttatttacctttcttccaagaagaggaaaactttcaatgacatt |
193 |
Q |
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| T |
31219581 |
gcgtgagttctaagactaagcctaaacatgacaaaatgttgaaaacgtgaattgctttatttacctttcttccaagaagagtaaaactttcaacgacatt |
31219482 |
T |
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| Q |
194 |
ataaaagtgatgggatgaaacatgaattgatgagtaacactaag |
237 |
Q |
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| T |
31219481 |
ataaaagtgatgggatgaaacatggattgatgagtaatactaag |
31219438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 231 - 395
Target Start/End: Complemental strand, 31219282 - 31219118
Alignment:
| Q |
231 |
cactaagacgttgtgatgcaggaagtatatataacattaaggtatagaagacactccttggtcatcggtaaacgaagaagtacgatcaccatctttgtcc |
330 |
Q |
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| T |
31219282 |
cactaagacgttgtgatgcaggaagtatata--acattaaggtatagaagacactccttggtcatcagtaaacgaagaagtacgatcaccatctttgtcc |
31219185 |
T |
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| Q |
331 |
attgtcaatt--ttttgaaattttgtatattgtgtcaatgatcttgattaagttattctttacgatt |
395 |
Q |
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| T |
31219184 |
attgtcaattttttttgaaattttgtatattgtgtcaatgatcttgattaagttattcttgacgatt |
31219118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 404 - 536
Target Start/End: Complemental strand, 31219062 - 31218930
Alignment:
| Q |
404 |
tactggtctatatccatatttctattaaattgttcacttacattaaatatgcaattaaggaagtttaaaaagcggaattttgttcatatatgcatgtaac |
503 |
Q |
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| T |
31219062 |
tactggtctatatccatatttctattaaattgttcacttacattaaacatgcaattaaggaagtttaaaaagcggaattttgttcatatatgcatgtaac |
31218963 |
T |
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| Q |
504 |
tataaaggggagagtagctgcactagagtgaag |
536 |
Q |
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| T |
31218962 |
tataaaggggagtgtagctgcactagagtgaag |
31218930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 415 - 577
Target Start/End: Complemental strand, 31222942 - 31222783
Alignment:
| Q |
415 |
atccatatttctattaaattgttcacttacattaaatatgcaattaaggaagtttaaaaagcggaattttgttcatatatgcatgt-aactataaagggg |
513 |
Q |
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| T |
31222942 |
atccatatttctattaaattgttcacttaca-tgtacatgcaattatggaagttcaaaaagttgaattttgtccatatatgaatgtgtactataaagagg |
31222844 |
T |
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| Q |
514 |
agagtagctgcactagagtgaaggaagaacgttgaattcatgtacaacatcatgttgttcagtg |
577 |
Q |
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| T |
31222843 |
agtatagttgcactagagtga---tagaatgttgaattcctttacaacatcatgttgtttagtg |
31222783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 31223122 - 31223044
Alignment:
| Q |
299 |
taaacgaagaagtacgatcaccatctttgtccattgtcaattttttgaaattttgtatattgtgtcaatgatcttgatt |
377 |
Q |
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| T |
31223122 |
taaatgaagaagtgcaatcaccatgttggtccattgcgaatcttgtgaaattttgtatattgtgtcaatgatcttgatt |
31223044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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