View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_low_7 (Length: 580)

Name: NF11426_low_7
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_low_7
NF11426_low_7
[»] chr2 (12 HSPs)
chr2 (18-399)||(39411950-39412333)
chr2 (24-174)||(39402648-39402795)
chr2 (24-238)||(39139562-39139765)
chr2 (448-520)||(39411882-39411954)
chr2 (24-115)||(39453700-39453791)
chr2 (522-570)||(39410296-39410344)
chr2 (60-147)||(39154053-39154140)
chr2 (440-570)||(39157080-39157210)
chr2 (24-147)||(39471834-39471952)
chr2 (29-120)||(39217089-39217180)
chr2 (62-119)||(39371864-39371921)
chr2 (55-119)||(39420434-39420498)
[»] chr7 (1 HSPs)
chr7 (52-289)||(19809842-19810081)
[»] chr8 (1 HSPs)
chr8 (157-197)||(45343407-45343447)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 39412333 - 39411950
Alignment:
Q  18 gaggtgtcatgatgaaaacctaatgttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaat 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||| |||    
T  39412333 gaggtttcatgatgaaaacctaatgttgctagtctatgagatagtagaggaaatgggtgaaatgaatccttttaagaaataggacaactcctggtttaat 39412234  T
Q  118 tttataaattcaaatacatttagatgataactcataagtaaaaactatgcaggacatatacaaagatactaagattaatactgtattatatctcggtaac 217  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  39412233 tttataaattcaaatacttttagatgataactgataagtaaaaactatgcaggacatatacaaagatactaagattaata---tattatatctcggtaac 39412137  T
Q  218 ttggtatggaattgaactcatattggctacatttgtttcccctaaaagttgtcatttgttaaaagaaaattggc-agagtgagaaacagagagaa----- 311  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||         
T  39412136 ttggtatggaattgaactcatattgcctacatttgtttcccctaaaagttgtcatttgttaaaagaaaattgacaagagtgagaaacagagagaattctg 39412037  T
Q  312 --------ttttacatgtgaatatgtatgtcctccggtagtagtagtagtaatatttatgttagcaggtttccataaccgcatttctttacattat 399  Q
            ||||||||||||||||||||||||||          ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  39412036 tcaaagccttttacatgtgaatatgtatgtcctc---------gagtagtagtatttatgttagcaggtttccataaccacatttctttacattat 39411950  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 39402795 - 39402648
Alignment:
Q  24 tcatgatgaaaacctaatgttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaattttata 123  Q
    |||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||  |||||    
T  39402795 tcatgatgaaaatctaatgttgctagtttacgagatggtaaaggaaataggtgaaatgaatcctt-taagaaataggacaactcttggttaaa--ttata 39402699  T
Q  124 aattcaaatacatttagatgataactcataagtaaaaactatgcaggacat 174  Q
    | |  |||||| |||||||||||||| |||||||||||||||| |||||||    
T  39402698 attcaaaatacttttagatgataactgataagtaaaaactatggaggacat 39402648  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 39139562 - 39139765
Alignment:
Q  24 tcatgatgaaaacctaatgttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaattttata 123  Q
    ||||| ||||||||||| |||| | |  ||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||| || | ||||||||||    
T  39139562 tcatgctgaaaacctaaagttgtttgagtatgagataataaaggaa-tgggtgaaatgaatccttttaagaaataggacaactcatgttgaaattttata 39139660  T
Q  124 aattcaaatacatttagatgataactcataagtaaaaactatgcaggacatatacaaagatactaagattaatactgtattatatctcggtaacttggta 223  Q
    ||||||||||| ||||||||       ||||||||||||| ||||||| ||||||||||||||| ||||| |||   ||||| || | ||||||||||||    
T  39139661 aattcaaatacttttagatg-------ataagtaaaaactgtgcaggatatatacaaagatactcagattgata---tattagatgttggtaacttggta 39139750  T
Q  224 tggaattgaactcat 238  Q
     | ||| ||||||||    
T  39139751 cgaaatggaactcat 39139765  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 39411954 - 39411882
Alignment:
Q  448 attatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccataggcttaaatatgtta 520  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39411954 attatctctgtttcttggctttctagtctttctttctcatgtattttaaatctccataggcttaaatatgtta 39411882  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 39453700 - 39453791
Alignment:
Q  24 tcatgatgaaaacctaatgttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaa 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||  ||||||||| ||||    
T  39453700 tcatgatgaaaacctaaagttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttttatgaaatagaacaactcttgtttaa 39453791  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 522 - 570
Target Start/End: Original strand, 39410296 - 39410344
Alignment:
Q  522 ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctg 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39410296 ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctg 39410344  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 39154053 - 39154140
Alignment:
Q  60 agtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaattttataaattcaaatacatttagatgataa 147  Q
    |||||| ||||||||||||||||||| || ||||||||| | ||||||||| ||||||||  |||| |||||||| ||||||||||||    
T  39154053 agtaaaagaaatgggtgaaatgaatcattttaagaaataagacaactcttgtttaaatttgctaaagtcaaatacctttagatgataa 39154140  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 440 - 570
Target Start/End: Original strand, 39157080 - 39157210
Alignment:
Q  440 ttaacaggattatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccat-aggcttaaatatgttatataggaacatgttcata 538  Q
    |||||||||||||| || |||||||||||  || | |||||||||| ||||||||||||   ||  |||||||||| ||| || ||  ||||||||||||    
T  39157080 ttaacaggattatcactatttcttggcttcataatctttctttctcttgtattttaaattatcaggaggcttaaatttgt-atgtaaaaacatgttcata 39157178  T
Q  539 ttcacgtgtaacttgagtattaatcttctctg 570  Q
    ||||| ||||||||||| ||| ||||||||||    
T  39157179 ttcacatgtaacttgagcattgatcttctctg 39157210  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 39471952 - 39471834
Alignment:
Q  24 tcatgatgaaaacctaatgttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttct-aagaaataggtcaactcttggttaaattttat 122  Q
    ||||||||||| || || | |||||||| |||||||||||||||||||| ||      || |||| | |||||||||| ||||||||  | ||||||||     
T  39471952 tcatgatgaaacccgaaagctgctagtccatgagatagtaaaggaaatgtgt------aaccctttttaagaaataggacaactctttttgaaattttaa 39471859  T
Q  123 aaattcaaatacatttagatgataa 147  Q
    |||||||||||||||||||||||||    
T  39471858 aaattcaaatacatttagatgataa 39471834  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 39217089 - 39217180
Alignment:
Q  29 atgaaaacctaatgttgctagtctatgagatagtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaatttt 120  Q
    |||||||||| | ||||||||||| | ||||||||||| |||||  |  |||||||  || ||| ||||||| ||||||||| |||||||||    
T  39217089 atgaaaacctgaagttgctagtctctaagatagtaaagtaaatgtttcgaatgaatttttttaacaaataggacaactcttgtttaaatttt 39217180  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 39371864 - 39371921
Alignment:
Q  62 taaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaattt 119  Q
    ||||||||||||| |||||||||| || |||||||| || ||||||||  ||||||||    
T  39371864 taaaggaaatgggcgaaatgaatcattttaagaaattggacaactcttttttaaattt 39371921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 39420498 - 39420434
Alignment:
Q  55 gagatagtaaaggaaatgggtgaaatgaatccttctaagaaataggtcaactcttggttaaattt 119  Q
    ||||||||||||||||| ||||||||||| | || |||||||| || | ||| ||| ||||||||    
T  39420498 gagatagtaaaggaaataggtgaaatgaacctttttaagaaatcggaccactgttgtttaaattt 39420434  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 289
Target Start/End: Original strand, 19809842 - 19810081
Alignment:
Q  52 tatgagatagtaaaggaaatgggtgaaatgaatccttctaagaaatagg-------tcaactcttggttaaattttataaattcaaatacatttagatga 144  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||        |||||| || | ||||||||||||||||||||| ||||||||     
T  19809842 tatgagatagtaaaggaa-tgggtgaaatgaatccttctaagaaataggacaactcacaactcatgttcaaattttataaattcaaatacttttagatg- 19809939  T
Q  145 taactcataagtaaaaactatgcaggacatatacaaagatactaagattaatactgtattatatctcggtaacttggtatggaattgaactcat---att 241  Q
          ||||||||||||| ||||||| ||||||||||||||| ||||| |||   ||||| || | |||||||||||| | ||| |||||| |    ||    
T  19809940 ------ataagtaaaaactttgcaggatatatacaaagatactcagattgata---tattaaatgttggtaacttggtacgaaatggaactcgtgtagtt 19810030  T
Q  242 ggctaca-tttgtttcccctaaaagt--tgtcatttgttaaaagaaaattg 289  Q
    |||| || |||||||||||||| |||  | ||||||||||| |||||||||    
T  19810031 ggcttcattttgtttcccctaacagttctatcatttgttaagagaaaattg 19810081  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 45343407 - 45343447
Alignment:
Q  157 aaaaactatgcaggacatatacaaagatactaagattaata 197  Q
    |||||| |||||||| |||||||||||||||| ||||||||    
T  45343407 aaaaacaatgcaggatatatacaaagatactatgattaata 45343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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