View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_8 (Length: 496)
Name: NF11426_low_8
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 59 - 488
Target Start/End: Complemental strand, 47423164 - 47422724
Alignment:
| Q |
59 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgt-----------------ttatactacc |
141 |
Q |
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| T |
47423164 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgtatcattcttaatcatgtttatactacc |
47423065 |
T |
|
| Q |
142 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctgctgcttattatacaaacaactgagttgatgaaaataaggacaa |
241 |
Q |
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| T |
47423064 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctg------attatacaaagaactgagttgatgaaaataaggacaa |
47422971 |
T |
|
| Q |
242 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422970 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
47422871 |
T |
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| Q |
342 |
cacttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttat |
441 |
Q |
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| T |
47422870 |
cgcttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttcaacattattgttgcttctgtttat |
47422771 |
T |
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| Q |
442 |
tacacttgtagtagacttgaggtttatgagtgccaacacttcttctc |
488 |
Q |
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| T |
47422770 |
tacacttgtagtagacttgaggtttatgagtgccaacacttcatctc |
47422724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 47423216 - 47423184
Alignment:
| Q |
16 |
aaaaaatatatggttgaactaattattttgatg |
48 |
Q |
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| T |
47423216 |
aaaaaatatatggttgaactaattattttgatg |
47423184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 390
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
283 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
382 |
Q |
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| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
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| Q |
383 |
ctctccca |
390 |
Q |
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|||||||| |
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| T |
36127506 |
ctctccca |
36127513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 12683339 - 12683295
Alignment:
| Q |
299 |
aaatacttatttatgttttcccatttttctttacacctctttgca |
343 |
Q |
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|||||||| || |||||||||||||| ||||| |||||||||||| |
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| T |
12683339 |
aaatacttgttaatgttttcccatttctctttgcacctctttgca |
12683295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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