View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_low_9 (Length: 492)
Name: NF11426_low_9
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 41487653 - 41488118
Alignment:
| Q |
19 |
gaggtgagcctggttctgtcatgtttttcgaagttgctgcaaggctgttggtgtctgnnnnnnn-ctgttggttagggcactggtttttctgctactgct |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41487653 |
gaggtgagcctggttctgtcatgtttttcgaagctgctgcaaggctgttggtgtctgttttttttctgttggttagggcactggtttttctgctactgct |
41487752 |
T |
|
| Q |
118 |
gtgagttttctgtctgggttttgggggtgcaggtagcattggagttttgtttctgggtgtagtttaggcctagcgctttggactgtctagacttgttctg |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41487753 |
gtgggttttctgtctgggttttgggggtgcaggtagcattgaagttttgtttctgggtgtagtttaggcctagcgctttggactgtctagacttgttctg |
41487852 |
T |
|
| Q |
218 |
ggcttctattttaggcacagtttttgtcttt-gccagctgtggtgctatttgttgagtgtaggggtgcggcgctcgtctatccttttcttgtttgttggt |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41487853 |
ggcttctattttaggcacagtttttgtcttttgccagctgtggtgttgtttgttgagtgtaggggtgcggcgctcgtctatccttttcttgtttgttggt |
41487952 |
T |
|
| Q |
317 |
tttagcaagtcatgcgcttcttgtgtgcaggcgatgcattaataatagaaaaatgctaaataacacgacaagattttttcgtgctacacacgaatgcgct |
416 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
41487953 |
tttagcaagtcatgcgctacttgtgtgcaggcgatgcattaataatagaaaaatgctaagtaacatgacaagattttttcgtgctacacacgaatgcgct |
41488052 |
T |
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| Q |
417 |
atttctacttgg-ttgccatatcaaacatgtttctctctatttatgtgttgtgttttcagcttcat |
481 |
Q |
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| T |
41488053 |
atttctacttggtttgccatatcaaacacgtttctctctatttatgtgttgtgttttcagcttcat |
41488118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 481
Target Start/End: Complemental strand, 4118871 - 4118753
Alignment:
| Q |
363 |
agaaaaatgctaaataacacgacaagattttttcgtgctacacacgaatgcgctatttctacttggtt-gccatatcaaacatgtttctctctatttatg |
461 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4118871 |
agaaaaatgctaaataacacgacaagattttt-cgtgctacacacgaatgcactatttctacttggtttgccatatcaaacatgtttctctctatttatg |
4118773 |
T |
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| Q |
462 |
tgttgtgttttcagcttcat |
481 |
Q |
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| T |
4118772 |
tgttgtgttttcagcttcat |
4118753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 31713541 - 31713438
Alignment:
| Q |
378 |
aacacgacaagattttttcgtgctacacacgaatgcgctatttctacttggtt-gccatatcaaacatgtttctctctatttatgtgttgtgttttcagc |
476 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
31713541 |
aacacgacaagattttt-cgtgctacacacgaatgcactatttctacttggtttgccatatcaaacacgtttctctttatttatgtgttgtattttcagc |
31713443 |
T |
|
| Q |
477 |
ttcat |
481 |
Q |
| |
|
||||| |
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|
| T |
31713442 |
ttcat |
31713438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 481
Target Start/End: Original strand, 50498016 - 50498133
Alignment:
| Q |
364 |
gaaaaatgctaaataacacgacaagattttttcgtgctacacacgaatgcgctatttctacttggtt-gccatatcaaacatgtttctctctatttatgt |
462 |
Q |
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|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
50498016 |
gaaaaatgctaaataacacgacaaaaatttt-cgtgctacacacgaatgcgctatttctacttggtttgtcatatcaaacacgtttctctctatttatgt |
50498114 |
T |
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| Q |
463 |
gttgtgttttcagcttcat |
481 |
Q |
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||||||||||||||||||| |
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| T |
50498115 |
gttgtgttttcagcttcat |
50498133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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