View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_high_11 (Length: 468)
Name: NF11427_high_11
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 334789 - 334351
Alignment:
| Q |
18 |
cttttccctctcgtgagctgattcaagctgcagtaatgtatagccgatatttcttttaaattaataccgggaaaaacagatataatggcattcaaataaa |
117 |
Q |
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| T |
334789 |
cttttccctctcgtgagctgattcaagctgcagtaatgtatagccgatatttcttttaaattaataccgggaaaagcagatataatggcattcaaataaa |
334690 |
T |
|
| Q |
118 |
acgattttaatacaaacgagagaaagaaaaatgtctacttataggtaatacagcaagtaaacttgttgcatttggattttacaaattcaacttatttcct |
217 |
Q |
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| T |
334689 |
acgatcttaatacaaacgagagaaagaaaaatgtctacttataggtaatacagcaagtaaacttgttgcatttggattttacaaattcaacttatttcct |
334590 |
T |
|
| Q |
218 |
tgctaattgataagcaccaaacacttgggaaacctcacttaaaagttagctgtcaaagaaaaagaaccacaccatttaactacaccgaaaatttcatact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334589 |
tgctaattgataagcaccaaacacttgggaaacctcacttaaaagttagctgtcaaagaaaaagaaccacaccatttaactacaccgaaaatttcatact |
334490 |
T |
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| Q |
318 |
aatatggacttagcatcctataaaacccaagttcttatcactaatttgtacggtactagcgatcagggcctgtcttccattcatcttaaatccaatttac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334489 |
aatatggacttagcatcctataaaacccaagttcttatcactaatttgtacggtactagcgatcagggcctgtcttccattcatcttaaatccaatttac |
334390 |
T |
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| Q |
418 |
ctccagcacaccaaaaatcgcagtgaattatgtacccta |
456 |
Q |
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| T |
334389 |
ctccagcacaccaaaaatcgcagtgaattatgtacccta |
334351 |
T |
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