View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11427_high_17 (Length: 275)
Name: NF11427_high_17
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4842281 - 4842535
Alignment:
| Q |
1 |
tctggcagtatgat-caacatactaattcgctgttagcttgacttatgaagctatgtcgactaaaaaacaa--tcaacgtttcaaataatgagtcaaaaa |
97 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
4842281 |
tctggcagtatgattcaacatactaattcgctgttagcttgacttatgaagatatgtcgactaaaaaataaaatcaacgtttcaaacaatgagtcaaaaa |
4842380 |
T |
|
| Q |
98 |
ttaatttttcagcttgttgagaaggtaatctttacttattacgaaagaaagaaattgccaattttaattgaatgtatacaacacttattttttgtagatg |
197 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
4842381 |
ttaatttttcagcttgttgaggaggtagtctttact----acgaaagaaagaaattgccaattttaattgaatgtatacaacacttatttttcgttgatg |
4842476 |
T |
|
| Q |
198 |
aaatagtaactttcatacctaattcaactaacaaatgttgaaattgtaaggccgaacat |
256 |
Q |
| |
|
||||||||||||| ||| ||| |||||| ||||||||| |||||| |||| ||||||| |
|
|
| T |
4842477 |
aaatagtaacttttatatctagctcaactgacaaatgttaaaattgcaaggtcgaacat |
4842535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University