View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_high_18 (Length: 261)
Name: NF11427_high_18
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 334271 - 334019
Alignment:
| Q |
1 |
caattgtaactaagctaaccttgagaattcaattgtgagaaatacatcatataatcatataaattataaattttaaaacctacaaactaaagcagcattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
334271 |
caattgtaactaagctaaccttgagaattcaattgtgagaaatacatcatataatcatataaattataaattttaaaacctacaaactcaagtagcattt |
334172 |
T |
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| Q |
101 |
tgtattatccaacattttgacacttcaaccaatagtacatatgattcccagagagacataggtcattcgcaaataaatgaaaatgagtctaactgat-aa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
334171 |
tgtattatccaacattttgacacttcaaccaatagtacatatgattcccagagagacataggtcattcgcaaataaatgaaaatgagtctaactgataaa |
334072 |
T |
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| Q |
200 |
aatcaagccctttaaatacataccaaggatttctccattgctgctatctgtgc |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334071 |
aatcaagccctttaaatacataccaaggatttctccattgctgctatctgtgc |
334019 |
T |
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