View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_high_21 (Length: 254)
Name: NF11427_high_21
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 3035583 - 3035818
Alignment:
| Q |
18 |
gaatatacactcaagtcattagtagatgaataaaatagaatgaatcatcacattcttccattgattcaattaattagagactaacacgatgatcctaagt |
117 |
Q |
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| T |
3035583 |
gaatatacactcaagtcattagtacatgaataaaatagaat----catcacattcttccattgattcagttaattagagactaacacgatgatcctaagt |
3035678 |
T |
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| Q |
118 |
ttctcaaaatacatgcaggaacttgatccacgtttatcacacgttcaccatagg---nnnnnnnnncatataaatatgacaacagtcctaccttattttt |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||| | ||||||||| |
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| T |
3035679 |
ttctcaaaatacatgcaggaacttggtccacgtttatcacacgtgcaccataggaaaaaaaaaaaacatatagctatgacaacagtcccatcttattttt |
3035778 |
T |
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| Q |
215 |
ggtaaaagacaataatccaaccttaacttacaagcacaac |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3035779 |
ggtaaaagacaataatccaaccttaacttacaagcacaac |
3035818 |
T |
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