View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_high_23 (Length: 247)
Name: NF11427_high_23
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 33283177 - 33283294
Alignment:
| Q |
122 |
attagagtgagtaaaccatgttttcaactaagctcattattgtacttcatctaaatgatcttttcatctaacgttccccaaaaattactttcaaagatat |
221 |
Q |
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| T |
33283177 |
attagagtgagtaaaccatgttttcaactaagctcattattgtacttcatctaaatggtcttttcatctaacgttccccaaaaattactttcaaagatat |
33283276 |
T |
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| Q |
222 |
gtttttctttttcatctc |
239 |
Q |
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|||||||||||||||||| |
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| T |
33283277 |
gtttttctttttcatctc |
33283294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 33282987 - 33283093
Alignment:
| Q |
17 |
caagtatatgaagacaaatttgaattattcgattctctaaaatcatcatcaacttcagagactaattaatggtttggctaaatatcaatctactaaaaaa |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33282987 |
caagtatatgaagacaaatttgaattatttgattctctaaaatcatcatcaacttcagagactaattaatggtttggctaaatatcaatctactcaaaaa |
33283086 |
T |
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| Q |
117 |
tgactat |
123 |
Q |
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||||||| |
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| T |
33283087 |
tgactat |
33283093 |
T |
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