View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_high_3 (Length: 670)
Name: NF11427_high_3
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 17 - 655
Target Start/End: Complemental strand, 41846678 - 41846040
Alignment:
| Q |
17 |
cagcaagaggcctagcaaggattcatggagagtatagtgcagcaaagatacctcatggaaatgtgaaatcatcaaatgtgatacttgacaagaatggggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846678 |
cagcaagaggcctagcaaggattcatggagagtatagtgcagcaaagatacctcatggaaatgtgaaatcatcaaatgtgatacttgacaagaatggggt |
41846579 |
T |
|
| Q |
117 |
tgcttgcataggtgactttggtttgtcactattattaaaccctgctcacgcagttgcaaggctgggtgggtacagggctccagaacaggcggaagctaag |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846578 |
tgcttgcataggtgactttggtttgtcactgttattaaaccctgctcacgcagttgcaaggctgggtgggtacagggctccagaacaggcggaagctaag |
41846479 |
T |
|
| Q |
217 |
aagctttcacaagaggcagacgtgtatgcttttggagtattggtgttggaaattttgacaggaagagctccttcctctcagtattcttctcccgtaggag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41846478 |
aagctttcacaagaggcagacgtgtatgcttttggagtattggtgttggaagttttgacaggaagagctccttcctctcagtattcttctccagtaggag |
41846379 |
T |
|
| Q |
317 |
ttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846378 |
ttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaaga |
41846279 |
T |
|
| Q |
417 |
acttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttg |
516 |
Q |
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| T |
41846278 |
acttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttg |
41846179 |
T |
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| Q |
517 |
gatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcaattcactttcaccttcacttgccacga |
616 |
Q |
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| T |
41846178 |
gatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcgattcactttcaccttcacttgccacga |
41846079 |
T |
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| Q |
617 |
ctgaagattgcttagcttaatagcactagtgttattcat |
655 |
Q |
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| T |
41846078 |
ctgaagattgcttagcttaatagcactagtgttattcat |
41846040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 352 - 624
Target Start/End: Original strand, 26890655 - 26890927
Alignment:
| Q |
352 |
gatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttg |
451 |
Q |
| |
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|||||||| ||||||||||| || || |||| || |||||||| ||||| ||||||||||||||| || | ||||||||||||||||| ||||||| |
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| T |
26890655 |
gatcttcccaaatgggttcgatcagtcgtgagagaagagtggactggggaggtttttgatcaagaacttctgcgatacaagaacattgaggaagagcttg |
26890754 |
T |
|
| Q |
452 |
tttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtgga |
551 |
Q |
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| ||||||||| ||||||| | |||||||| | | || || ||||| |||||||| ||| | ||||||||||| ||||| |||||||| || ||||| |
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| T |
26890755 |
tgtcaatgctgcatgttgggttggcttgtgtggtgcagcagccagagaagaggccaactatggtagatgttgttaaaatgattgaggatatcagagtgga |
26890854 |
T |
|
| Q |
552 |
acaatctcctctaagagaggattatgatgaatctcgcaattcactttcaccttcacttgccacgactgaagat |
624 |
Q |
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||||||||||| | ||||| ||||| ||||| |||||||| ||||||||||| || |||| ||||||||| |
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| T |
26890855 |
gcaatctcctctgtgtgaggactatgacgaatcacgcaattcgctttcaccttccattcccaccactgaagat |
26890927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 26890320 - 26890507
Alignment:
| Q |
17 |
cagcaagaggcctagcaaggattcatggagagtatagtgcagcaaagatacctcatggaaatgtgaaatcatcaaatgtgatacttgacaagaatggggt |
116 |
Q |
| |
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|||||||||| || || ||||| ||| |||||| ||||||||||| | || ||||| || ||||||||||| ||||| ||||||||||||| || || |
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| T |
26890320 |
cagcaagagggcttgctaggatccatacagagtacagtgcagcaaaagtgccacatgggaacgtgaaatcatccaatgtactacttgacaagaacggtgt |
26890419 |
T |
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| Q |
117 |
tgcttgcataggtgactttggtttgtcactattattaaaccctgctcacgcagttgcaaggctgggtgggtacagggctccagaacag |
204 |
Q |
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|||||||||| ||||||||| ||||||||| | |||||||||| ||| ||| |||| | ||||||||||||| || || |||||| |
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| T |
26890420 |
tgcttgcatatctgactttgggttgtcactactgttaaaccctgttcatgcaactgcacgattgggtgggtacagagcacctgaacag |
26890507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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