View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_high_6 (Length: 572)
Name: NF11427_high_6
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 555
Target Start/End: Complemental strand, 4289982 - 4289442
Alignment:
| Q |
18 |
tcaaatatcttctcagacaaatccacatctacaagaactctagcatataatccaaacctcttattttgtgtagcttcatctatggtcaagggtgttccaa |
117 |
Q |
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| T |
4289982 |
tcaaatagcttcttagacaaatccacatctactagaactctagcatataatccaaacctcctattttctgtagcttcatctatggtaaagggtgttccaa |
4289883 |
T |
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| Q |
118 |
gacatgatgcaatcttatatagggttttccttctccaatattattgtggcaaatgcattaaatgcacccaaatttgagcatgagattgtacctgagtttg |
217 |
Q |
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| T |
4289882 |
gacctgatgcaatctcatatagggttttccttctccaatattattgtggcaaatgcaataaacgcacccaaatttgagcatgagattgtgcctgagtttg |
4289783 |
T |
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| Q |
218 |
acgcgtaaaattcctaggccggcaaaagaattgcaatatcctaggtttcaaattcatcactctgaacgccaaaatcctcctcatattctccgccgaattg |
317 |
Q |
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| T |
4289782 |
aggcgtaaaatccctagtccagcgaaagaattgcaatatcccatgcttaaaattcatcaccccgaacgccaaaatcctcctcatatcctccacaaaattg |
4289683 |
T |
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| Q |
318 |
aacatgaattcaa-aaaacctttccctaaagggattacagtccaatttcgcagatttggccacattcaagtgag--ttagcttcagggcttgcgttgtca |
414 |
Q |
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| T |
4289682 |
aacttgaattcaaaaaaaactttccctaaagggattacagtccaattttgcatatttagccacaatcaattgagcttcagcttcagcgattgcgttgtca |
4289583 |
T |
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| Q |
415 |
aaggtggaaatcccttgttaagaggcaatctagcgtgaaggttccacttgcaatcttcaattccatgctcatactcatccttagatattctgactcgaac |
514 |
Q |
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| T |
4289582 |
aaggtggatctcccttgctaagagtcaatctaacgtgaaggttccgcttgcaatcttcaattccatgctcatactcatcctgagatatcttaactcgaac |
4289483 |
T |
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| Q |
515 |
cgtgtcactcataataatcttggtaggtagctgagaaagtt |
555 |
Q |
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| T |
4289482 |
tgtgtcacccataataacctcgataggtagctgataaagtt |
4289442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 22753911 - 22754025
Alignment:
| Q |
87 |
gtagcttcatctatggtcaagggtgttccaagacatgatgcaatcttatatagggttttccttctccaatattattgtggcaaatgcattaaatgcaccc |
186 |
Q |
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|||||||||||||| |||||||| ||||| | || |||||||||| | ||| || ||| |||||||||||| || || |||||||| || | |||| |
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| T |
22753911 |
gtagcttcatctatagtcaagggggttcccaaaccagatgcaatctcaaataacgtcttctttctccaatattcctgaggtaaatgcatcaatcggaccc |
22754010 |
T |
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| Q |
187 |
aaatttgagcatgag |
201 |
Q |
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| T |
22754011 |
aaatttgcgcatgag |
22754025 |
T |
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Back To:
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