View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_10 (Length: 541)
Name: NF11427_low_10
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 158 - 524
Target Start/End: Complemental strand, 10133143 - 10132773
Alignment:
| Q |
158 |
cacgaatcattttaaatttcgttagttttaacgatcaacttgactgtgccaacaattttaaggattaaattggtgattcactcaaaggacattgcttgaa |
257 |
Q |
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| T |
10133143 |
cacgaatcattttaaatttcgttagttttaacgatcaagttgactgtgccaacaattttacggattaaattggtgattcactcaaaggacattgcttgaa |
10133044 |
T |
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| Q |
258 |
tcctaaatatta----tatcttatacacaacgtaggctaattctgaaatatgtctcctcctataatgtcctaggactcctagcctttaagatacataata |
353 |
Q |
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| T |
10133043 |
tcctaaatattactcatatcttatacacaacgtaggctaattctgaaatatgtctcctcctataatgtcctaggactcctagcctttaagatacataata |
10132944 |
T |
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| Q |
354 |
aaattaaatttcaacttttgcattctgaacaatcaggtaaagtcaagtacctgttcttcatgtgttaagtgatgtttcaagagaagcatcccaggcctca |
453 |
Q |
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| T |
10132943 |
aaattaaatttcaacttttgcattctgaacaatcaggtaaagtcaagtacctgttcttcatgtgttaagtggtgtttcaagagaaccatcccaggcctca |
10132844 |
T |
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| Q |
454 |
gtattccgtcatttgtttctttatttgttcctccatcctgcatctcaaattcaatgcagctgtccttgttc |
524 |
Q |
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| T |
10132843 |
gtattacgtcatttgtttctttatttgttcctccatcctgcatctcaaattcaatgcagctgtccttgttc |
10132773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 10133732 - 10133580
Alignment:
| Q |
1 |
gtgtctgtgtccgtgcttcatagttcaacatgtatgacatacatatatattccaatcaagcgtaagaagtgattgtgaatctttcaggaatatgaaggca |
100 |
Q |
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| T |
10133732 |
gtgtctgtgtccgtgcttcatagttcaacacgtatgacatacatatatattccaatcaagcgtaagaagtgattgtgaatctttcaggaatatgaaggca |
10133633 |
T |
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| Q |
101 |
gaccaggcatataaatgcattctattacaacaagtgaaagaaattccaagaat |
153 |
Q |
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| T |
10133632 |
gaccaggcatataaatgcattctattacaacaagtgaaagaaattccaagaat |
10133580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 10990518 - 10990464
Alignment:
| Q |
246 |
acattgcttgaatcctaaatattatatcttatacacaacgtaggctaattctgaa |
300 |
Q |
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| T |
10990518 |
acattgcctgaatcctacatattatatcttatacacaatgtaggctaattctgaa |
10990464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 18062086 - 18062140
Alignment:
| Q |
246 |
acattgcttgaatcctaaatattatatcttatacacaacgtaggctaattctgaa |
300 |
Q |
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| T |
18062086 |
acattgcctgaatcctacatattatatcttatacacaatgtaggctaattctgaa |
18062140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 10246492 - 10246438
Alignment:
| Q |
246 |
acattgcttgaatcctaaatattatatcttatacacaacgtaggctaattctgaa |
300 |
Q |
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| T |
10246492 |
acattgcctgaatcctacatattatatcttatacacaatgtaggctaattctgaa |
10246438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 17921873 - 17921819
Alignment:
| Q |
246 |
acattgcttgaatcctaaatattatatcttatacacaacgtaggctaattctgaa |
300 |
Q |
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| T |
17921873 |
acattgcctgaatcctacatattatatcttatacacaatgtaggctaattctgaa |
17921819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 16692633 - 16692579
Alignment:
| Q |
246 |
acattgcttgaatcctaaatattatatcttatacacaacgtaggctaattctgaa |
300 |
Q |
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| T |
16692633 |
acattgcttgaatcctacatattatatcttatacacaatgtaggctaattttgaa |
16692579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 21420051 - 21420105
Alignment:
| Q |
246 |
acattgcttgaatcctaaatattatatcttatacacaacgtaggctaattctgaa |
300 |
Q |
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| T |
21420051 |
acattgcttgaatcctacatattatatcttatacacaatgtatgctaattctgaa |
21420105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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