View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11427_low_11 (Length: 516)

Name: NF11427_low_11
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11427_low_11
NF11427_low_11
[»] chr1 (4 HSPs)
chr1 (304-441)||(23203409-23203547)
chr1 (230-303)||(23204849-23204922)
chr1 (433-476)||(23203272-23203315)
chr1 (2-64)||(33161436-33161498)
[»] chr5 (11 HSPs)
chr5 (1-133)||(41900181-41900313)
chr5 (22-220)||(32268817-32269021)
chr5 (230-303)||(32250396-32250470)
chr5 (241-303)||(32255881-32255943)
chr5 (230-303)||(32264927-32265000)
chr5 (305-340)||(32264762-32264797)
chr5 (398-476)||(32264597-32264675)
chr5 (83-123)||(41886296-41886336)
chr5 (1-47)||(32268772-32268818)
chr5 (336-389)||(32255573-32255626)
chr5 (304-340)||(32255711-32255747)
[»] chr4 (6 HSPs)
chr4 (230-303)||(28719574-28719647)
chr4 (1-64)||(55907434-55907497)
chr4 (75-123)||(1488824-1488872)
chr4 (3-58)||(2525761-2525816)
chr4 (79-124)||(1537250-1537295)
chr4 (16-60)||(2625367-2625411)
[»] chr7 (4 HSPs)
chr7 (9-66)||(15091347-15091404)
chr7 (5-64)||(10168806-10168865)
chr7 (5-64)||(10176331-10176390)
chr7 (86-127)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (1-66)||(513426-513491)
chr3 (81-123)||(51120330-51120372)
[»] chr2 (2 HSPs)
chr2 (75-123)||(45244526-45244574)
chr2 (1-64)||(1036176-1036239)
[»] chr8 (2 HSPs)
chr8 (1-64)||(32152208-32152271)
chr8 (78-123)||(17642614-17642659)
[»] chr6 (1 HSPs)
chr6 (5-57)||(6395781-6395833)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 304 - 441
Target Start/End: Complemental strand, 23203547 - 23203409
Alignment:
Q  304 tagttacttgcaattatttgcatctt-ataattttatcaagtatgtgtagctggtcccttccattgtatgtgtctgggtttgcccttgtcggttcataaa 402  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||    
T  23203547 tagttacttgcaattatttgcatctttataattttatcaagtatgtgtagctggtcccttccattgtatgagtctgagattgcccttgtcagttcataaa 23203448  T
Q  403 aaagatgtagattcaaccaaggccctctcttccttaatg 441  Q
     |||||||||||||| ||||||||||||| |||||||||    
T  23203447 caagatgtagattcacccaaggccctctcctccttaatg 23203409  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 23204922 - 23204849
Alignment:
Q  230 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 303  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  23204922 cttgcaccacagaagacagtttcaaccatatcaatgaactcttgttcgtctctgagagtccaattaatcatatt 23204849  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 23203315 - 23203272
Alignment:
Q  433 tccttaatgttagtctatgtttaggggaaagtttgtgaagctca 476  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  23203315 tccttaatgctggtctatgtttaggggaaagtttgtgaagctca 23203272  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 33161436 - 33161498
Alignment:
Q  2 gagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 64  Q
    |||||||||||| | || | ||||||||| ||||||||||||||||| || ||||| ||||||    
T  33161436 gagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41900313 - 41900181
Alignment:
Q  1 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacat 100  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |   ||| ||||| |||||||||||||||||||||    
T  41900313 agagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagacacat 41900214  T
Q  101 tcgcaacactcatctggtaaatatgaaccagaa 133  Q
    || ||||||||||||||||||||||||||||||    
T  41900213 tcccaacactcatctggtaaatatgaaccagaa 41900181  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 32268817 - 32269021
Alignment:
Q  22 gatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaa 121  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||  ||||| ||| || | |||||||||||||||||| ||||||||||||||||||    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  122 tatgaaccagaaatatatcattgatt---ttcttctttttgcatcactg-------atgttctacttcttctttttgtttgagtggacttcatagttgcc 211  Q
    ||||||||||||    ||||||||||   ||||||||||||||||||||       ||||||| ||||||||||||||   |||||||| |||||||  |    
T  32268917 tatgaaccagaa----atcattgattttcttcttctttttgcatcactggaccgcaatgttcttcttcttctttttgtcgaagtggactccatagttagc 32269012  T
Q  212 agatgagtg 220  Q
    |||||||||    
T  32269013 agatgagtg 32269021  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 32250470 - 32250396
Alignment:
Q  230 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctc-tgagagcccaattaatcatatt 303  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||||||| | ||||||||||||||||||||    
T  32250470 cttgaaccacggaagacagtttcaacggtatcaacgaactcttgtttgtctcttcagagcccaattaatcatatt 32250396  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 32255943 - 32255881
Alignment:
Q  241 gaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 303  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||| ||||    
T  32255943 gaagacagtttcaacggtatcaacgaactcttgtttgtctctgagaacccaattaatcttatt 32255881  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 32265000 - 32264927
Alignment:
Q  230 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 303  Q
    |||||||| | |||||||||||||||  |||||| |||||||||||||||||||| | ||||||||||| ||||    
T  32265000 cttgcaccgcagaagacagtttcaacggtatcaacgaactcttgtttgtctctgataacccaattaatcttatt 32264927  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 32264797 - 32264762
Alignment:
Q  305 agttacttgcaattatttgcatcttataattttatc 340  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264797 agttacttgcaattatttgcatcttataattttatc 32264762  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 32264675 - 32264597
Alignment:
Q  398 ataaaaaagatgtagattcaaccaaggccctctcttccttaatgttagtctatgtttaggggaaagtttgtgaagctca 476  Q
    ||||| ||| |||||||||||||||| |||||||  |||||||||| ||||  ||||| |||||| |||||| ||||||    
T  32264675 ataaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaaatttgtgtagctca 32264597  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  83 aggaatttgaagacacattcgcaacactcatctggtaaata 123  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32268772 - 32268818
Alignment:
Q  1 agagaatcgaagattgttggagatggagagcaactgtttggagacga 47  Q
    |||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  32268772 agagaatcgaagacggttggtgatggagagtaactgtttggagacga 32268818  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 32255626 - 32255573
Alignment:
Q  336 ttatcaagtatgtgtagctggtcccttccattgtatgtgtctgggtttgccctt 389  Q
    ||||||||||||||||  ||||||| |||||||||||  ||||||| |||||||    
T  32255626 ttatcaagtatgtgtatatggtcccatccattgtatgaatctgggtgtgccctt 32255573  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 32255747 - 32255711
Alignment:
Q  304 tagttacttgcaattatttgcatcttataattttatc 340  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  32255747 tagttacttgcaattacttgcatcatataattttatc 32255711  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 28719647 - 28719574
Alignment:
Q  230 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 303  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28719647 cttgcaccatggaagacagtttcaacgatatcaatgaactcttgtttgtctctgagagcccaattaatcttatt 28719574  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55907497 - 55907434
Alignment:
Q  1 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 64  Q
    ||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  55907497 agagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 1488872 - 1488824
Alignment:
Q  75 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 123  Q
    |||||||||||||||||| ||||||||| || |||||||| ||||||||    
T  1488872 cgtcgttgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 2525761 - 2525816
Alignment:
Q  3 agaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagat 58  Q
    ||||||||||| |||||| |||||| || |||||||| |||||||| |||||||||    
T  2525761 agaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 1537295 - 1537250
Alignment:
Q  79 gttgaggaatttgaagacacattcgcaacactcatctggtaaatat 124  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||||    
T  1537295 gttgaggaatctgaatacacattcccaacactcatcaggtaaatat 1537250  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 2625411 - 2625367
Alignment:
Q  16 gttggagatggagagcaactgtttggagacgagtgagagagattt 60  Q
    ||||||||||||||| || ||||||||||| || |||||||||||    
T  2625411 gttggagatggagagaaaatgtttggagactagcgagagagattt 2625367  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 15091404 - 15091347
Alignment:
Q  9 gaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 66  Q
    ||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
T  15091404 gaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 10168865 - 10168806
Alignment:
Q  5 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 64  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10168865 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 10176390 - 10176331
Alignment:
Q  5 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 64  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10176390 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  86 aatttgaagacacattcgcaacactcatctggtaaatatgaa 127  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 513491 - 513426
Alignment:
Q  1 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 66  Q
    ||||||||| |||||||||| ||||||||| |||||||| ||||||   |||||||||||||||||    
T  513491 agagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 51120372 - 51120330
Alignment:
Q  81 tgaggaatttgaagacacattcgcaacactcatctggtaaata 123  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 51120330  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 45244574 - 45244526
Alignment:
Q  75 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 123  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45244574 cgtcgttgaggaatttcaagacacattcccaacactcatcaggtaaata 45244526  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1036239 - 1036176
Alignment:
Q  1 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 64  Q
    ||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  1036239 agagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32152208 - 32152271
Alignment:
Q  1 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 64  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||||||||| ||||| || ||||||    
T  32152208 agagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 17642659 - 17642614
Alignment:
Q  78 cgttgaggaatttgaagacacattcgcaacactcatctggtaaata 123  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||    
T  17642659 cgttgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 6395781 - 6395833
Alignment:
Q  5 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagaga 57  Q
    ||||||||||  |||| ||||||||| ||||| ||||||||||| ||||||||    
T  6395781 aatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

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