View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_17 (Length: 279)
Name: NF11427_low_17
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 4865200 - 4864976
Alignment:
| Q |
36 |
aatgtgactactttaaaatgcagccataattattttaatgtggattttgtaacaaagagatcttttgaccatttcaaagttgtcaatttcacagaaattt |
135 |
Q |
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| T |
4865200 |
aatgtgactactttaaaatgcagccataattattttaatgtggtttttgtaacaaagagatcttttgaccatttcaaagttgtcaatttcacagaaattt |
4865101 |
T |
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| Q |
136 |
cccttcctacctctcaatgtttataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttc |
235 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4865100 |
cccttcctacctttcaatgtttataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttc |
4865001 |
T |
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| Q |
236 |
tcacacaactatggcaaactcgata |
260 |
Q |
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| T |
4865000 |
tcacacaactatggcaaactcgata |
4864976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 4673814 - 4673758
Alignment:
| Q |
200 |
caacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactc |
256 |
Q |
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| T |
4673814 |
caacaacaacagaatcaacccttcttcaccctcttctcacacagctatggcaaactc |
4673758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 4711028 - 4711127
Alignment:
| Q |
157 |
tataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactc |
256 |
Q |
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| T |
4711028 |
tataacaataaataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattttcacataactatggcaaactc |
4711127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 4644780 - 4644746
Alignment:
| Q |
220 |
cttcttcaccctcttctcacacaactatggcaaac |
254 |
Q |
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| T |
4644780 |
cttcttcactctcttctcacacaactatggcaaac |
4644746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 4637942 - 4637906
Alignment:
| Q |
220 |
cttcttcaccctcttctcacacaactatggcaaactc |
256 |
Q |
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| T |
4637942 |
cttcttcactctcttctcacacagctatggcaaactc |
4637906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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