View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_18 (Length: 279)
Name: NF11427_low_18
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_18 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 65729 - 65469
Alignment:
| Q |
3 |
cagagagtaaaaccgcgtcgttttggacaaatgaaaaacacgtaaactacctcaatactatggaagcttcttttcttcgtacaatgttccaaaacaaagg |
102 |
Q |
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| T |
65729 |
cagaaagtaaaaccacgtcgttttggacaaatgaaaaacacgtaaactacctcaatactatggaagcttcttttcttcgtacaatgttccaaaacaaagg |
65630 |
T |
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| Q |
103 |
ttgtcgttcttcttcttcccatcacagtcgtcaaattcttcgactcgatcgacaacttcccgatagctctgaatcaacccttgatttgaaacctcaccat |
202 |
Q |
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| T |
65629 |
ttgtcgttcttcttcttcccatcacagccgtcaaattcttcgactcgatcgacaacttcccgatagctctgaatcaacccttgatttgaaacctcaccat |
65530 |
T |
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| Q |
203 |
ggaagccgcaccagaaaacaccataaaacttcaggtatatgatcgtttttcatctcatctt |
263 |
Q |
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| T |
65529 |
ggaagccgcaccagaaaacaccataaaacttcaggtatatgatcgtttttcatctcatctt |
65469 |
T |
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