View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_2 (Length: 789)
Name: NF11427_low_2
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 418 - 770
Target Start/End: Original strand, 29155563 - 29155912
Alignment:
| Q |
418 |
tattgagtataagcttgttttcaagaaggtacattctgttctct--acttatgccacaaactattatgtgtctttcatgtgacttttcaagatgtatatt |
515 |
Q |
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| T |
29155563 |
tattgactataagcttgttctcgagaaggtacattctgttctctctactta-gccacaaactattatgtgtctttcatgtgacttttcaagatgtatatt |
29155661 |
T |
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| Q |
516 |
tatataaaagtttcactttcacctattgtacg-tttaaattgtatctagaaaatcttattaccaaaatggtgttggcatgtgccaagccaagacatgtat |
614 |
Q |
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| T |
29155662 |
tatataaaagtttcactttcacctattgtaagttttaaattgtatctagaaaatcttattaccaaaatggtgttggcatg-----ggccaagacatgtat |
29155756 |
T |
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| Q |
615 |
ttatgcaagcttgaaagagatatactaaagattgagtaatgcttatgaataatgcttaatatagtaatacactaaagattgaataatgcttaaaagagac |
714 |
Q |
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| T |
29155757 |
ttatgcaagcttgaaagagatatactaaagattgagtaatgcttatgaatattgcttaatatagtaatacactaaagattgaataatgcttaaaagagac |
29155856 |
T |
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| Q |
715 |
atacaaaatggagttgacaataatgcttaaaagggagatgtattttgtgcgactct |
770 |
Q |
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| T |
29155857 |
atacaaaatggagttgacaataatgcttaaaagggagatgtattttgtgcgactct |
29155912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 29155459 - 29155561
Alignment:
| Q |
220 |
cttgtagtaatgagtccctaaggttacttctaaatctccttgagttatcttcctttttctctttagagtaaatgttagagaaaattctcaaaagaaagtg |
319 |
Q |
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| T |
29155459 |
cttgtggtaatgtgtccctaaaattacttctaaatttccttgagttctcttccattttctcttaagagtgagtgtcagagagagttctcaaaagagagtg |
29155558 |
T |
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| Q |
320 |
ttg |
322 |
Q |
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| T |
29155559 |
ttg |
29155561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 34468093 - 34468024
Alignment:
| Q |
59 |
gtgaggaaggtaagaaaggaaacagccaaaatccattttattaattgtttttattatttgccgttgatct |
128 |
Q |
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| T |
34468093 |
gtgaggaaagtaggaaaggaaacaaccaaaatccattttatttaatttttttattagttgtcgttgatct |
34468024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 26775649 - 26775557
Alignment:
| Q |
398 |
caacacacatataatgaagatattgagtataagcttgttttcaagaaggtacattctgttctctacttatgccacaaactattatgtgtcttt |
490 |
Q |
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| T |
26775649 |
caacgcacatacaatgaacttgttgagtataagcttgttctgcagaaggtacagtctgttctctacgtataccacaaatcactatgtgtcttt |
26775557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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