View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_21 (Length: 259)
Name: NF11427_low_21
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 12844555 - 12844313
Alignment:
| Q |
15 |
atgaaccaaagacctatagccttgtgctaaccgtagtatgctcaacatatagtgatagaaacatagccaattgccacaacnnnnnnnnnnnnnnnnntca |
114 |
Q |
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| T |
12844555 |
atgaaccaaagacctatagccttgtgctaaccgtagtatgctcaacatatagtgatagaaacatagccaattgcca-aaaaaaaaaaaaatgaaaaatca |
12844457 |
T |
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| Q |
115 |
tacacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaatnnnnnnnnctgtggaaactctgaaacgaagaaat |
214 |
Q |
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| T |
12844456 |
tagacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaat-aaaaaaactgtggaaactctgaaacgaagaaat |
12844358 |
T |
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| Q |
215 |
tggttgttgtaaccgttttataaatgaatcctggcgcgggaaatt |
259 |
Q |
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| T |
12844357 |
tggttgttgtaaccgttttataaatgaatcctggcgcgggaaatt |
12844313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 12861065 - 12861204
Alignment:
| Q |
120 |
aattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaatnnnnnnnnctgtggaaactctgaaacgaagaaattggtt |
219 |
Q |
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| T |
12861065 |
aattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaataaaaaaaactgtggaaactctgaaacgaagaaattggtt |
12861164 |
T |
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| Q |
220 |
gttgtaaccgttttataaatgaatcctggcgcgggaaatt |
259 |
Q |
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| T |
12861165 |
gttacaaccgttttataaataaatcctggcgcgggaaatt |
12861204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 12860961 - 12861000
Alignment:
| Q |
24 |
agacctatagccttgtgctaaccgtagtatgctcaacata |
63 |
Q |
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| T |
12860961 |
agacctatagccctttgctaaccgtagtatgctcaacata |
12861000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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